Luminescence: Comprehensive Luminescence Dating Data Analysis

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A collection of various R functions for the purpose of Luminescence dating data analysis. This includes, amongst others, data import, export, application of age models, curve deconvolution, sequence analysis and plotting of equivalent dose distributions.

Author
Sebastian Kreutzer [aut, trl, cre], Michael Dietze [aut], Christoph Burow [aut, trl, dtc], Margret C. Fuchs [aut], Christoph Schmidt [aut], Manfred Fischer [aut, trl], Johannes Friedrich [aut], Norbert Mercier [aut], Rachel K. Smedley [aut], Julie Durcan [aut], Georgina King [aut], Markus Fuchs [ths]
Date of publication
2016-09-09 14:52:58
Maintainer
Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
License
GPL-3
Version
0.6.4
URLs

View on CRAN

Man pages

analyse_baSAR
Bayesian models (baSAR) applied on luminescence data
analyse_IRSAR.RF
Analyse IRSAR RF measurements
analyse_pIRIRSequence
Analyse post-IR IRSL sequences
analyse_SAR.CWOSL
Analyse SAR CW-OSL measurements
Analyse_SAR.OSLdata
Analyse SAR CW-OSL measurements.
analyse_SAR.TL
Analyse SAR TL measurements
apply_CosmicRayRemoval
Function to remove cosmic rays from an RLum.Data.Spectrum S4...
apply_EfficiencyCorrection
Function to apply spectral efficiency correction to...
app_RLum
Run Luminescence shiny apps (wrapper)
as
as() - RLum-object coercion
BaseDataSet.CosmicDoseRate
Base data set for cosmic dose rate calculation
bin_RLum.Data
Channel binning - method dispatchter
calc_AliquotSize
Estimate the amount of grains on an aliquot
calc_CentralDose
Apply the central age model (CAM) after Galbraith et al....
calc_CommonDose
Apply the (un-)logged common age model after Galbraith et al....
calc_CosmicDoseRate
Calculate the cosmic dose rate
calc_FadingCorr
Apply a fading correction according to Huntley & Lamothe...
calc_FastRatio
Calculate the Fast Ratio for CW-OSL curves
calc_FiniteMixture
Apply the finite mixture model (FMM) after Galbraith (2005)...
calc_FuchsLang2001
Apply the model after Fuchs & Lang (2001) to a given De...
calc_gSGC
Calculate De value based on the gSGC by Li et al., 2015
calc_HomogeneityTest
Apply a simple homogeneity test after Galbraith (2003)
calc_IEU
Apply the internal-external-uncertainty (IEU) model after...
calc_MaxDose
Apply the maximum age model to a given De distribution
calc_MinDose
Apply the (un-)logged minimum age model (MAM) after Galbraith...
calc_OSLLxTxRatio
Calculate Lx/Tx ratio for CW-OSL curves
calc_SourceDoseRate
Calculation of the source dose rate via the date of...
calc_Statistics
Function to calculate statistic measures
calc_ThermalLifetime
Calculates the Thermal Lifetime using the Arrhenius equation
calc_TLLxTxRatio
Calculate the Lx/Tx ratio for a given set of TL curves [beta...
CW2pHMi
Transform a CW-OSL curve into a pHM-OSL curve via...
CW2pLM
Transform a CW-OSL curve into a pLM-OSL curve
CW2pLMi
Transform a CW-OSL curve into a pLM-OSL curve via...
CW2pPMi
Transform a CW-OSL curve into a pPM-OSL curve via...
ExampleData.BINfileData
Example data from a SAR OSL and SAR TL measurement for the...
ExampleData.CW_OSL_Curve
Example CW-OSL curve data for the package Luminescence
ExampleData.DeValues
Example De data sets for the package Luminescence
ExampleData.FittingLM
Example data for fit_LMCurve() in the package Luminescence
ExampleData.LxTxData
Example Lx/Tx data from CW-OSL SAR measurement
ExampleData.LxTxOSLData
Example Lx and Tx curve data from an artificial OSL...
ExampleData.RLum.Analysis
Example data as 'RLum.Analysis' objects
ExampleData.RLum.Data.Image
Example data as 'RLum.Data.Image' objects
ExampleData.XSYG
Example data for a SAR OSL measurement and a TL spectrum...
extract_IrradiationTimes
Extract irradiation times from an XSYG file
fit_CWCurve
Nonlinear Least Squares Fit for CW-OSL curves [beta version]
fit_LMCurve
Nonlinear Least Squares Fit for LM-OSL curves
get_Layout
Collection of layout definitions
get_Quote
Function to return essential quotes
get_rightAnswer
Function to get the right answer
get_Risoe.BINfileData
General accessor function for RLum S4 class objects
get_RLum
General accessor function for RLum S4 class objects
length_RLum
General accessor function for RLum S4 class objects
Luminescence-package
Comprehensive Luminescence Dating Data Analysis
merge_Risoe.BINfileData
Merge Risoe.BINfileData objects or Risoe BIN-files
merge_RLum
General merge function for RLum S4 class objects
merge_RLum.Analysis
Merge function for RLum.Analysis S4 class objects
merge_RLum.Data.Curve
Merge function for RLum.Data.Curve S4 class objects
merge_RLum.Results
Merge function for RLum.Results S4-class objects
methods_RLum
methods_RLum
model_LuminescenceSignals
Model Luminescence Signals (wrapper)
names_RLum
S4-names function for RLum S4 class objects
plot_AbanicoPlot
Function to create an Abanico Plot.
plot_DetPlot
Create De(t) plot
plot_DRTResults
Visualise dose recovery test results
plot_FilterCombinations
Plot filter combinations along with the (optional) net...
plot_GrowthCurve
Fit and plot a growth curve for luminescence data (Lx/Tx...
plot_Histogram
Plot a histogram with separate error plot
plot_KDE
Plot kernel density estimate with statistics
plot_NRt
Visualise natural/regenerated signal ratios
plot_RadialPlot
Function to create a Radial Plot
plot_Risoe.BINfileData
Plot single luminescence curves from a BIN file object
plot_RLum
General plot function for RLum S4 class objects
plot_RLum.Analysis
Plot function for an RLum.Analysis S4 class object
plot_RLum.Data.Curve
Plot function for an RLum.Data.Curve S4 class object
plot_RLum.Data.Image
Plot function for an 'RLum.Data.Image' S4 class object
plot_RLum.Data.Spectrum
Plot function for an RLum.Data.Spectrum S4 class object
plot_RLum.Results
Plot function for an RLum.Results S4 class object
plot_ViolinPlot
Create a violin plot
read_BIN2R
Import Risoe BIN-file into R
read_Daybreak2R
Import Daybreak ASCII dato into R
read_SPE2R
Import Princeton Intruments (TM) SPE-file into R
read_XSYG2R
Import XSYG files to R
replicate_RLum
General replication function for RLum S4 class objects
report_RLum
Create a HTML report for (RLum) objects
Risoe.BINfileData2RLum.Analysis
Convert Risoe.BINfileData object to an RLum.Analysis object
Risoe.BINfileData-class
Class '"Risoe.BINfileData"'
RLum.Analysis-class
Class '"RLum.Analysis"'
RLum-class
Class '"RLum"'
RLum.Data-class
Class '"RLum.Data"'
RLum.Data.Curve-class
Class '"RLum.Data.Curve"'
RLum.Data.Image-class
Class '"RLum.Data.Image"'
RLum.Data.Spectrum-class
Class '"RLum.Data.Spectrum"'
RLum.Results-class
Class '"RLum.Results"'
Second2Gray
Converting equivalent dose values from seconds (s) to gray...
set_Risoe.BINfileData
General accessor function for RLum S4 class objects
set_RLum
General set function for RLum S4 class objects
sTeve
sTeve - sophisticated tool for efficient data validation and...
structure_RLum
General structure function for RLum S4 class objects
template_DRAC
Create a DRAC input data template (v1.1)
tune_Data
Tune data for experimental purpose
use_DRAC
Use DRAC to calculate dose rate data
verify_SingleGrainData
Verify single grain data sets and check for invalid grains,...
write_R2BIN
Export Risoe.BINfileData into Risoe BIN-file

Files in this package

Luminescence
Luminescence/inst
Luminescence/inst/CITATION
Luminescence/inst/NEWS.Rd
Luminescence/inst/doc
Luminescence/inst/doc/index.html
Luminescence/inst/doc/S4classObjects.pdf
Luminescence/src
Luminescence/src/analyse_IRSARRF_SRS.cpp
Luminescence/src/create_UID.cpp
Luminescence/src/RcppExports.cpp
Luminescence/NAMESPACE
Luminescence/NEWS
Luminescence/data
Luminescence/data/ExampleData.BINfileData.RData
Luminescence/data/ExampleData.RLum.Data.Image.RData
Luminescence/data/ExampleData.CW_OSL_Curve.RData
Luminescence/data/ExampleData.DeValues.RData
Luminescence/data/ExampleData.LxTxData.RData
Luminescence/data/ExampleData.XSYG.RData
Luminescence/data/ExampleData.RLum.Analysis.RData
Luminescence/data/datalist
Luminescence/data/BaseDataSet.CosmicDoseRate.RData
Luminescence/data/ExampleData.FittingLM.RData
Luminescence/data/ExampleData.LxTxOSLData.RData
Luminescence/R
Luminescence/R/RLum.Data-class.R
Luminescence/R/get_Layout.R
Luminescence/R/calc_AliquotSize.R
Luminescence/R/plot_RLum.Data.Spectrum.R
Luminescence/R/report_RLum.R
Luminescence/R/replicate_RLum.R
Luminescence/R/template_DRAC.R
Luminescence/R/names_RLum.R
Luminescence/R/apply_EfficiencyCorrection.R
Luminescence/R/write_R2BIN.R
Luminescence/R/RLum-class.R
Luminescence/R/CW2pHMi.R
Luminescence/R/plot_RLum.Results.R
Luminescence/R/CW2pLM.R
Luminescence/R/Second2Gray.R
Luminescence/R/calc_OSLLxTxRatio.R
Luminescence/R/plot_RadialPlot.R
Luminescence/R/RLum.Data.Image-class.R
Luminescence/R/set_RLum.R
Luminescence/R/calc_CentralDose.R
Luminescence/R/internals_RLum.R
Luminescence/R/calc_CommonDose.R
Luminescence/R/methods_DRAC.R
Luminescence/R/calc_IEU.R
Luminescence/R/calc_HomogeneityTest.R
Luminescence/R/app_RLum.R
Luminescence/R/plot_RLum.Data.Image.R
Luminescence/R/merge_RLum.Results.R
Luminescence/R/RLum.Analysis-class.R
Luminescence/R/methods_RLum.R
Luminescence/R/extract_IrradiationTimes.R
Luminescence/R/plot_RLum.R
Luminescence/R/analyse_IRSAR.RF.R
Luminescence/R/read_Daybreak2R.R
Luminescence/R/plot_DRTResults.R
Luminescence/R/plot_RLum.Data.Curve.R
Luminescence/R/merge_Risoe.BINfileData.R
Luminescence/R/plot_Risoe.BINfileData.R
Luminescence/R/read_BIN2R.R
Luminescence/R/get_RLum.R
Luminescence/R/RisoeBINfileData-class.R
Luminescence/R/get_Risoe.BINfileData.R
Luminescence/R/set_Risoe.BINfileData.R
Luminescence/R/fit_LMCurve.R
Luminescence/R/Risoe.BINfileData2RLum.Analysis.R
Luminescence/R/bin_RLum.Data.R
Luminescence/R/merge_RLum.Data.Curve.R
Luminescence/R/plot_GrowthCurve.R
Luminescence/R/RLum.Data.Curve-class.R
Luminescence/R/plot_NRt.R
Luminescence/R/apply_CosmicRayRemoval.R
Luminescence/R/RLum.Results-class.R
Luminescence/R/calc_FuchsLang2001.R
Luminescence/R/verify_SingleGrainData.R
Luminescence/R/calc_Statistics.R
Luminescence/R/get_Quote.R
Luminescence/R/RcppExports.R
Luminescence/R/tune_Data.R
Luminescence/R/analyse_pIRIRSequence.R
Luminescence/R/plot_DetPlot.R
Luminescence/R/calc_FastRatio.R
Luminescence/R/read_XSYG2R.R
Luminescence/R/model_LuminescenceSignals.R
Luminescence/R/calc_MinDose.R
Luminescence/R/analyse_SAR.CWOSL.R
Luminescence/R/use_DRAC.R
Luminescence/R/read_SPE2R.R
Luminescence/R/plot_AbanicoPlot.R
Luminescence/R/plot_RLum.Analysis.R
Luminescence/R/calc_TLLxTxRatio.R
Luminescence/R/Luminescence-package.R
Luminescence/R/calc_FadingCorr.R
Luminescence/R/calc_MaxDose.R
Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R
Luminescence/R/calc_gSGC.R
Luminescence/R/calc_CosmicDoseRate.R
Luminescence/R/merge_RLum.R
Luminescence/R/Analyse_SAR.OSLdata.R
Luminescence/R/plot_ViolinPlot.R
Luminescence/R/structure_RLum.R
Luminescence/R/merge_RLum.Analysis.R
Luminescence/R/plot_FilterCombinations.R
Luminescence/R/calc_ThermalLifetime.R
Luminescence/R/calc_FiniteMixture.R
Luminescence/R/CW2pPMi.R
Luminescence/R/length_RLum.R
Luminescence/R/plot_Histogram.R
Luminescence/R/plot_KDE.R
Luminescence/R/calc_SourceDoseRate.R
Luminescence/R/CW2pLMi.R
Luminescence/R/get_rightAnswer.R
Luminescence/R/RLum.Data.Spectrum-class.R
Luminescence/R/analyse_SAR.TL.R
Luminescence/R/zzz.R
Luminescence/R/fit_CWCurve.R
Luminescence/R/internal_as.latex.table.R
Luminescence/R/analyse_baSAR.R
Luminescence/MD5
Luminescence/DESCRIPTION
Luminescence/man
Luminescence/man/RLum.Data-class.Rd
Luminescence/man/RLum-class.Rd
Luminescence/man/sTeve.Rd
Luminescence/man/tune_Data.Rd
Luminescence/man/plot_NRt.Rd
Luminescence/man/Analyse_SAR.OSLdata.Rd
Luminescence/man/set_Risoe.BINfileData.Rd
Luminescence/man/set_RLum.Rd
Luminescence/man/use_DRAC.Rd
Luminescence/man/calc_AliquotSize.Rd
Luminescence/man/Luminescence-package.Rd
Luminescence/man/RLum.Analysis-class.Rd
Luminescence/man/calc_FastRatio.Rd
Luminescence/man/plot_AbanicoPlot.Rd
Luminescence/man/analyse_SAR.CWOSL.Rd
Luminescence/man/plot_ViolinPlot.Rd
Luminescence/man/ExampleData.LxTxOSLData.Rd
Luminescence/man/RLum.Data.Curve-class.Rd
Luminescence/man/merge_RLum.Analysis.Rd
Luminescence/man/replicate_RLum.Rd
Luminescence/man/calc_FiniteMixture.Rd
Luminescence/man/merge_RLum.Rd
Luminescence/man/CW2pLM.Rd
Luminescence/man/analyse_IRSAR.RF.Rd
Luminescence/man/fit_LMCurve.Rd
Luminescence/man/get_Quote.Rd
Luminescence/man/calc_MinDose.Rd
Luminescence/man/app_RLum.Rd
Luminescence/man/ExampleData.XSYG.Rd
Luminescence/man/calc_CentralDose.Rd
Luminescence/man/merge_Risoe.BINfileData.Rd
Luminescence/man/read_SPE2R.Rd
Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd
Luminescence/man/merge_RLum.Data.Curve.Rd
Luminescence/man/CW2pLMi.Rd
Luminescence/man/merge_RLum.Results.Rd
Luminescence/man/ExampleData.CW_OSL_Curve.Rd
Luminescence/man/get_rightAnswer.Rd
Luminescence/man/analyse_pIRIRSequence.Rd
Luminescence/man/ExampleData.RLum.Analysis.Rd
Luminescence/man/plot_Histogram.Rd
Luminescence/man/plot_RLum.Analysis.Rd
Luminescence/man/get_Risoe.BINfileData.Rd
Luminescence/man/plot_RLum.Data.Image.Rd
Luminescence/man/ExampleData.LxTxData.Rd
Luminescence/man/get_Layout.Rd
Luminescence/man/plot_FilterCombinations.Rd
Luminescence/man/plot_Risoe.BINfileData.Rd
Luminescence/man/ExampleData.BINfileData.Rd
Luminescence/man/ExampleData.RLum.Data.Image.Rd
Luminescence/man/read_XSYG2R.Rd
Luminescence/man/apply_CosmicRayRemoval.Rd
Luminescence/man/CW2pPMi.Rd
Luminescence/man/bin_RLum.Data.Rd
Luminescence/man/RLum.Results-class.Rd
Luminescence/man/calc_OSLLxTxRatio.Rd
Luminescence/man/methods_RLum.Rd
Luminescence/man/plot_RLum.Data.Curve.Rd
Luminescence/man/plot_DRTResults.Rd
Luminescence/man/ExampleData.DeValues.Rd
Luminescence/man/calc_FadingCorr.Rd
Luminescence/man/apply_EfficiencyCorrection.Rd
Luminescence/man/analyse_SAR.TL.Rd
Luminescence/man/analyse_baSAR.Rd
Luminescence/man/calc_gSGC.Rd
Luminescence/man/calc_ThermalLifetime.Rd
Luminescence/man/plot_KDE.Rd
Luminescence/man/extract_IrradiationTimes.Rd
Luminescence/man/report_RLum.Rd
Luminescence/man/get_RLum.Rd
Luminescence/man/calc_CommonDose.Rd
Luminescence/man/ExampleData.FittingLM.Rd
Luminescence/man/RLum.Data.Image-class.Rd
Luminescence/man/calc_TLLxTxRatio.Rd
Luminescence/man/plot_RLum.Rd
Luminescence/man/calc_FuchsLang2001.Rd
Luminescence/man/structure_RLum.Rd
Luminescence/man/read_BIN2R.Rd
Luminescence/man/plot_RadialPlot.Rd
Luminescence/man/read_Daybreak2R.Rd
Luminescence/man/model_LuminescenceSignals.Rd
Luminescence/man/calc_HomogeneityTest.Rd
Luminescence/man/Second2Gray.Rd
Luminescence/man/calc_Statistics.Rd
Luminescence/man/calc_SourceDoseRate.Rd
Luminescence/man/template_DRAC.Rd
Luminescence/man/RLum.Data.Spectrum-class.Rd
Luminescence/man/plot_RLum.Results.Rd
Luminescence/man/calc_CosmicDoseRate.Rd
Luminescence/man/names_RLum.Rd
Luminescence/man/calc_IEU.Rd
Luminescence/man/plot_GrowthCurve.Rd
Luminescence/man/Risoe.BINfileData-class.Rd
Luminescence/man/plot_RLum.Data.Spectrum.Rd
Luminescence/man/plot_DetPlot.Rd
Luminescence/man/length_RLum.Rd
Luminescence/man/BaseDataSet.CosmicDoseRate.Rd
Luminescence/man/calc_MaxDose.Rd
Luminescence/man/fit_CWCurve.Rd
Luminescence/man/write_R2BIN.Rd
Luminescence/man/CW2pHMi.Rd
Luminescence/man/verify_SingleGrainData.Rd
Luminescence/man/as.Rd