Luminescence: Comprehensive Luminescence Dating Data Analysis

A collection of various R functions for the purpose of Luminescence dating data analysis. This includes, amongst others, data import, export, application of age models, curve deconvolution, sequence analysis and plotting of equivalent dose distributions.

AuthorSebastian Kreutzer [aut, trl, cre], Michael Dietze [aut], Christoph Burow [aut, trl, dtc], Margret C. Fuchs [aut], Christoph Schmidt [aut], Manfred Fischer [aut, trl], Johannes Friedrich [aut], Norbert Mercier [aut], Rachel K. Smedley [aut], Julie Durcan [aut], Georgina King [aut], Markus Fuchs [ths]
Date of publication2016-09-09 14:52:58
MaintainerSebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
LicenseGPL-3
Version0.6.4
https://CRAN.R-project.org/package=Luminescence

View on CRAN

Man pages

analyse_baSAR: Bayesian models (baSAR) applied on luminescence data

analyse_IRSAR.RF: Analyse IRSAR RF measurements

analyse_pIRIRSequence: Analyse post-IR IRSL sequences

analyse_SAR.CWOSL: Analyse SAR CW-OSL measurements

Analyse_SAR.OSLdata: Analyse SAR CW-OSL measurements.

analyse_SAR.TL: Analyse SAR TL measurements

apply_CosmicRayRemoval: Function to remove cosmic rays from an RLum.Data.Spectrum S4...

apply_EfficiencyCorrection: Function to apply spectral efficiency correction to...

app_RLum: Run Luminescence shiny apps (wrapper)

as: as() - RLum-object coercion

BaseDataSet.CosmicDoseRate: Base data set for cosmic dose rate calculation

bin_RLum.Data: Channel binning - method dispatchter

calc_AliquotSize: Estimate the amount of grains on an aliquot

calc_CentralDose: Apply the central age model (CAM) after Galbraith et al....

calc_CommonDose: Apply the (un-)logged common age model after Galbraith et al....

calc_CosmicDoseRate: Calculate the cosmic dose rate

calc_FadingCorr: Apply a fading correction according to Huntley & Lamothe...

calc_FastRatio: Calculate the Fast Ratio for CW-OSL curves

calc_FiniteMixture: Apply the finite mixture model (FMM) after Galbraith (2005)...

calc_FuchsLang2001: Apply the model after Fuchs & Lang (2001) to a given De...

calc_gSGC: Calculate De value based on the gSGC by Li et al., 2015

calc_HomogeneityTest: Apply a simple homogeneity test after Galbraith (2003)

calc_IEU: Apply the internal-external-uncertainty (IEU) model after...

calc_MaxDose: Apply the maximum age model to a given De distribution

calc_MinDose: Apply the (un-)logged minimum age model (MAM) after Galbraith...

calc_OSLLxTxRatio: Calculate Lx/Tx ratio for CW-OSL curves

calc_SourceDoseRate: Calculation of the source dose rate via the date of...

calc_Statistics: Function to calculate statistic measures

calc_ThermalLifetime: Calculates the Thermal Lifetime using the Arrhenius equation

calc_TLLxTxRatio: Calculate the Lx/Tx ratio for a given set of TL curves [beta...

CW2pHMi: Transform a CW-OSL curve into a pHM-OSL curve via...

CW2pLM: Transform a CW-OSL curve into a pLM-OSL curve

CW2pLMi: Transform a CW-OSL curve into a pLM-OSL curve via...

CW2pPMi: Transform a CW-OSL curve into a pPM-OSL curve via...

ExampleData.BINfileData: Example data from a SAR OSL and SAR TL measurement for the...

ExampleData.CW_OSL_Curve: Example CW-OSL curve data for the package Luminescence

ExampleData.DeValues: Example De data sets for the package Luminescence

ExampleData.FittingLM: Example data for fit_LMCurve() in the package Luminescence

ExampleData.LxTxData: Example Lx/Tx data from CW-OSL SAR measurement

ExampleData.LxTxOSLData: Example Lx and Tx curve data from an artificial OSL...

ExampleData.RLum.Analysis: Example data as 'RLum.Analysis' objects

ExampleData.RLum.Data.Image: Example data as 'RLum.Data.Image' objects

ExampleData.XSYG: Example data for a SAR OSL measurement and a TL spectrum...

extract_IrradiationTimes: Extract irradiation times from an XSYG file

fit_CWCurve: Nonlinear Least Squares Fit for CW-OSL curves [beta version]

fit_LMCurve: Nonlinear Least Squares Fit for LM-OSL curves

get_Layout: Collection of layout definitions

get_Quote: Function to return essential quotes

get_rightAnswer: Function to get the right answer

get_Risoe.BINfileData: General accessor function for RLum S4 class objects

get_RLum: General accessor function for RLum S4 class objects

length_RLum: General accessor function for RLum S4 class objects

Luminescence-package: Comprehensive Luminescence Dating Data Analysis

merge_Risoe.BINfileData: Merge Risoe.BINfileData objects or Risoe BIN-files

merge_RLum: General merge function for RLum S4 class objects

merge_RLum.Analysis: Merge function for RLum.Analysis S4 class objects

merge_RLum.Data.Curve: Merge function for RLum.Data.Curve S4 class objects

merge_RLum.Results: Merge function for RLum.Results S4-class objects

methods_RLum: methods_RLum

model_LuminescenceSignals: Model Luminescence Signals (wrapper)

names_RLum: S4-names function for RLum S4 class objects

plot_AbanicoPlot: Function to create an Abanico Plot.

plot_DetPlot: Create De(t) plot

plot_DRTResults: Visualise dose recovery test results

plot_FilterCombinations: Plot filter combinations along with the (optional) net...

plot_GrowthCurve: Fit and plot a growth curve for luminescence data (Lx/Tx...

plot_Histogram: Plot a histogram with separate error plot

plot_KDE: Plot kernel density estimate with statistics

plot_NRt: Visualise natural/regenerated signal ratios

plot_RadialPlot: Function to create a Radial Plot

plot_Risoe.BINfileData: Plot single luminescence curves from a BIN file object

plot_RLum: General plot function for RLum S4 class objects

plot_RLum.Analysis: Plot function for an RLum.Analysis S4 class object

plot_RLum.Data.Curve: Plot function for an RLum.Data.Curve S4 class object

plot_RLum.Data.Image: Plot function for an 'RLum.Data.Image' S4 class object

plot_RLum.Data.Spectrum: Plot function for an RLum.Data.Spectrum S4 class object

plot_RLum.Results: Plot function for an RLum.Results S4 class object

plot_ViolinPlot: Create a violin plot

read_BIN2R: Import Risoe BIN-file into R

read_Daybreak2R: Import Daybreak ASCII dato into R

read_SPE2R: Import Princeton Intruments (TM) SPE-file into R

read_XSYG2R: Import XSYG files to R

replicate_RLum: General replication function for RLum S4 class objects

report_RLum: Create a HTML report for (RLum) objects

Risoe.BINfileData2RLum.Analysis: Convert Risoe.BINfileData object to an RLum.Analysis object

Risoe.BINfileData-class: Class '"Risoe.BINfileData"'

RLum.Analysis-class: Class '"RLum.Analysis"'

RLum-class: Class '"RLum"'

RLum.Data-class: Class '"RLum.Data"'

RLum.Data.Curve-class: Class '"RLum.Data.Curve"'

RLum.Data.Image-class: Class '"RLum.Data.Image"'

RLum.Data.Spectrum-class: Class '"RLum.Data.Spectrum"'

RLum.Results-class: Class '"RLum.Results"'

Second2Gray: Converting equivalent dose values from seconds (s) to gray...

set_Risoe.BINfileData: General accessor function for RLum S4 class objects

set_RLum: General set function for RLum S4 class objects

sTeve: sTeve - sophisticated tool for efficient data validation and...

structure_RLum: General structure function for RLum S4 class objects

template_DRAC: Create a DRAC input data template (v1.1)

tune_Data: Tune data for experimental purpose

use_DRAC: Use DRAC to calculate dose rate data

verify_SingleGrainData: Verify single grain data sets and check for invalid grains,...

write_R2BIN: Export Risoe.BINfileData into Risoe BIN-file

Files in this package

Luminescence
Luminescence/inst
Luminescence/inst/CITATION
Luminescence/inst/NEWS.Rd
Luminescence/inst/doc
Luminescence/inst/doc/index.html
Luminescence/inst/doc/S4classObjects.pdf
Luminescence/src
Luminescence/src/analyse_IRSARRF_SRS.cpp
Luminescence/src/create_UID.cpp
Luminescence/src/RcppExports.cpp
Luminescence/NAMESPACE
Luminescence/NEWS
Luminescence/data
Luminescence/data/ExampleData.BINfileData.RData
Luminescence/data/ExampleData.RLum.Data.Image.RData
Luminescence/data/ExampleData.CW_OSL_Curve.RData
Luminescence/data/ExampleData.DeValues.RData
Luminescence/data/ExampleData.LxTxData.RData
Luminescence/data/ExampleData.XSYG.RData
Luminescence/data/ExampleData.RLum.Analysis.RData
Luminescence/data/datalist
Luminescence/data/BaseDataSet.CosmicDoseRate.RData
Luminescence/data/ExampleData.FittingLM.RData
Luminescence/data/ExampleData.LxTxOSLData.RData
Luminescence/R
Luminescence/R/RLum.Data-class.R Luminescence/R/get_Layout.R Luminescence/R/calc_AliquotSize.R Luminescence/R/plot_RLum.Data.Spectrum.R Luminescence/R/report_RLum.R Luminescence/R/replicate_RLum.R Luminescence/R/template_DRAC.R Luminescence/R/names_RLum.R Luminescence/R/apply_EfficiencyCorrection.R Luminescence/R/write_R2BIN.R Luminescence/R/RLum-class.R Luminescence/R/CW2pHMi.R Luminescence/R/plot_RLum.Results.R Luminescence/R/CW2pLM.R Luminescence/R/Second2Gray.R Luminescence/R/calc_OSLLxTxRatio.R Luminescence/R/plot_RadialPlot.R Luminescence/R/RLum.Data.Image-class.R Luminescence/R/set_RLum.R Luminescence/R/calc_CentralDose.R Luminescence/R/internals_RLum.R Luminescence/R/calc_CommonDose.R Luminescence/R/methods_DRAC.R Luminescence/R/calc_IEU.R Luminescence/R/calc_HomogeneityTest.R Luminescence/R/app_RLum.R Luminescence/R/plot_RLum.Data.Image.R Luminescence/R/merge_RLum.Results.R Luminescence/R/RLum.Analysis-class.R Luminescence/R/methods_RLum.R Luminescence/R/extract_IrradiationTimes.R Luminescence/R/plot_RLum.R Luminescence/R/analyse_IRSAR.RF.R Luminescence/R/read_Daybreak2R.R Luminescence/R/plot_DRTResults.R Luminescence/R/plot_RLum.Data.Curve.R Luminescence/R/merge_Risoe.BINfileData.R Luminescence/R/plot_Risoe.BINfileData.R Luminescence/R/read_BIN2R.R Luminescence/R/get_RLum.R Luminescence/R/RisoeBINfileData-class.R Luminescence/R/get_Risoe.BINfileData.R Luminescence/R/set_Risoe.BINfileData.R Luminescence/R/fit_LMCurve.R Luminescence/R/Risoe.BINfileData2RLum.Analysis.R Luminescence/R/bin_RLum.Data.R Luminescence/R/merge_RLum.Data.Curve.R Luminescence/R/plot_GrowthCurve.R Luminescence/R/RLum.Data.Curve-class.R Luminescence/R/plot_NRt.R Luminescence/R/apply_CosmicRayRemoval.R Luminescence/R/RLum.Results-class.R Luminescence/R/calc_FuchsLang2001.R Luminescence/R/verify_SingleGrainData.R Luminescence/R/calc_Statistics.R Luminescence/R/get_Quote.R Luminescence/R/RcppExports.R Luminescence/R/tune_Data.R Luminescence/R/analyse_pIRIRSequence.R Luminescence/R/plot_DetPlot.R Luminescence/R/calc_FastRatio.R Luminescence/R/read_XSYG2R.R Luminescence/R/model_LuminescenceSignals.R Luminescence/R/calc_MinDose.R Luminescence/R/analyse_SAR.CWOSL.R Luminescence/R/use_DRAC.R Luminescence/R/read_SPE2R.R Luminescence/R/plot_AbanicoPlot.R Luminescence/R/plot_RLum.Analysis.R Luminescence/R/calc_TLLxTxRatio.R Luminescence/R/Luminescence-package.R Luminescence/R/calc_FadingCorr.R Luminescence/R/calc_MaxDose.R Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R Luminescence/R/calc_gSGC.R Luminescence/R/calc_CosmicDoseRate.R Luminescence/R/merge_RLum.R Luminescence/R/Analyse_SAR.OSLdata.R Luminescence/R/plot_ViolinPlot.R Luminescence/R/structure_RLum.R Luminescence/R/merge_RLum.Analysis.R Luminescence/R/plot_FilterCombinations.R Luminescence/R/calc_ThermalLifetime.R Luminescence/R/calc_FiniteMixture.R Luminescence/R/CW2pPMi.R Luminescence/R/length_RLum.R Luminescence/R/plot_Histogram.R Luminescence/R/plot_KDE.R Luminescence/R/calc_SourceDoseRate.R Luminescence/R/CW2pLMi.R Luminescence/R/get_rightAnswer.R Luminescence/R/RLum.Data.Spectrum-class.R Luminescence/R/analyse_SAR.TL.R Luminescence/R/zzz.R Luminescence/R/fit_CWCurve.R Luminescence/R/internal_as.latex.table.R Luminescence/R/analyse_baSAR.R
Luminescence/MD5
Luminescence/DESCRIPTION
Luminescence/man
Luminescence/man/RLum.Data-class.Rd Luminescence/man/RLum-class.Rd Luminescence/man/sTeve.Rd Luminescence/man/tune_Data.Rd Luminescence/man/plot_NRt.Rd Luminescence/man/Analyse_SAR.OSLdata.Rd Luminescence/man/set_Risoe.BINfileData.Rd Luminescence/man/set_RLum.Rd Luminescence/man/use_DRAC.Rd Luminescence/man/calc_AliquotSize.Rd Luminescence/man/Luminescence-package.Rd Luminescence/man/RLum.Analysis-class.Rd Luminescence/man/calc_FastRatio.Rd Luminescence/man/plot_AbanicoPlot.Rd Luminescence/man/analyse_SAR.CWOSL.Rd Luminescence/man/plot_ViolinPlot.Rd Luminescence/man/ExampleData.LxTxOSLData.Rd Luminescence/man/RLum.Data.Curve-class.Rd Luminescence/man/merge_RLum.Analysis.Rd Luminescence/man/replicate_RLum.Rd Luminescence/man/calc_FiniteMixture.Rd Luminescence/man/merge_RLum.Rd Luminescence/man/CW2pLM.Rd Luminescence/man/analyse_IRSAR.RF.Rd Luminescence/man/fit_LMCurve.Rd Luminescence/man/get_Quote.Rd Luminescence/man/calc_MinDose.Rd Luminescence/man/app_RLum.Rd Luminescence/man/ExampleData.XSYG.Rd Luminescence/man/calc_CentralDose.Rd Luminescence/man/merge_Risoe.BINfileData.Rd Luminescence/man/read_SPE2R.Rd Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd Luminescence/man/merge_RLum.Data.Curve.Rd Luminescence/man/CW2pLMi.Rd Luminescence/man/merge_RLum.Results.Rd Luminescence/man/ExampleData.CW_OSL_Curve.Rd Luminescence/man/get_rightAnswer.Rd Luminescence/man/analyse_pIRIRSequence.Rd Luminescence/man/ExampleData.RLum.Analysis.Rd Luminescence/man/plot_Histogram.Rd Luminescence/man/plot_RLum.Analysis.Rd Luminescence/man/get_Risoe.BINfileData.Rd Luminescence/man/plot_RLum.Data.Image.Rd Luminescence/man/ExampleData.LxTxData.Rd Luminescence/man/get_Layout.Rd Luminescence/man/plot_FilterCombinations.Rd Luminescence/man/plot_Risoe.BINfileData.Rd Luminescence/man/ExampleData.BINfileData.Rd Luminescence/man/ExampleData.RLum.Data.Image.Rd Luminescence/man/read_XSYG2R.Rd Luminescence/man/apply_CosmicRayRemoval.Rd Luminescence/man/CW2pPMi.Rd Luminescence/man/bin_RLum.Data.Rd Luminescence/man/RLum.Results-class.Rd Luminescence/man/calc_OSLLxTxRatio.Rd Luminescence/man/methods_RLum.Rd Luminescence/man/plot_RLum.Data.Curve.Rd Luminescence/man/plot_DRTResults.Rd Luminescence/man/ExampleData.DeValues.Rd Luminescence/man/calc_FadingCorr.Rd Luminescence/man/apply_EfficiencyCorrection.Rd Luminescence/man/analyse_SAR.TL.Rd Luminescence/man/analyse_baSAR.Rd Luminescence/man/calc_gSGC.Rd Luminescence/man/calc_ThermalLifetime.Rd Luminescence/man/plot_KDE.Rd Luminescence/man/extract_IrradiationTimes.Rd Luminescence/man/report_RLum.Rd Luminescence/man/get_RLum.Rd Luminescence/man/calc_CommonDose.Rd Luminescence/man/ExampleData.FittingLM.Rd Luminescence/man/RLum.Data.Image-class.Rd Luminescence/man/calc_TLLxTxRatio.Rd Luminescence/man/plot_RLum.Rd Luminescence/man/calc_FuchsLang2001.Rd Luminescence/man/structure_RLum.Rd Luminescence/man/read_BIN2R.Rd Luminescence/man/plot_RadialPlot.Rd Luminescence/man/read_Daybreak2R.Rd Luminescence/man/model_LuminescenceSignals.Rd Luminescence/man/calc_HomogeneityTest.Rd Luminescence/man/Second2Gray.Rd Luminescence/man/calc_Statistics.Rd Luminescence/man/calc_SourceDoseRate.Rd Luminescence/man/template_DRAC.Rd Luminescence/man/RLum.Data.Spectrum-class.Rd Luminescence/man/plot_RLum.Results.Rd Luminescence/man/calc_CosmicDoseRate.Rd Luminescence/man/names_RLum.Rd Luminescence/man/calc_IEU.Rd Luminescence/man/plot_GrowthCurve.Rd Luminescence/man/Risoe.BINfileData-class.Rd Luminescence/man/plot_RLum.Data.Spectrum.Rd Luminescence/man/plot_DetPlot.Rd Luminescence/man/length_RLum.Rd Luminescence/man/BaseDataSet.CosmicDoseRate.Rd Luminescence/man/calc_MaxDose.Rd Luminescence/man/fit_CWCurve.Rd Luminescence/man/write_R2BIN.Rd Luminescence/man/CW2pHMi.Rd Luminescence/man/verify_SingleGrainData.Rd Luminescence/man/as.Rd

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