Man pages for MALDIquant
Quantitative Analysis of Mass Spectrometry Data

AbstractMassObject-class	Class "AbstractMassObject"
alignSpectra-functions	Align MassSpectrum objects.
averageMassSpectra-functions	Averages 'MassSpectrum' objects.
binPeaks-functions	Align Peaks into discrete bins.
calibrateIntensity-methods	Calibrates intensities of a MassSpectrum object.
createMassPeaks-functions	Creates a MassPeaks object.
createMassSpectrum-functions	Creates a MassSpectrum object.
detectPeaks-methods	Detects peaks in a MassSpectrum object.
determineWarpingFunctions-functions	Determine warping functions of MassPeaks objects.
estimateBaseline-methods	Estimates the baseline of a MassSpectrum object.
estimateNoise-methods	Estimates the noise of a MassSpectrum object.
fiedler2009subset	Example Mass Spectra (raw)
filterPeaks-functions	Removes less frequent peaks.
findEmptyMassObjects-functions	Finds or removes empty AbstractMassObject objects in a list.
intensityMatrix-functions	Converts a list of MassPeaks objects into a matrix.
isMassObject-functions	Tests for MassSpectrum or MassPeaks object.
isMassObjectList-functions	Tests a list of MassSpectrum or MassPeaks objects.
labelPeaks-methods	Draws peak labels to plot.
MALDIquant-defunct	Removed Functions/Methods in Package 'MALDIquant'
MALDIquant-deprecated	Deprecated Functions/Methods in Package 'MALDIquant'
MALDIquant-package	Quantitative Analysis of Mass Spectrometry Data
MALDIquant-parallel	Parallel Support in Package 'MALDIquant'
MassPeaks-class	Class "MassPeaks"
MassSpectrum-class	Class "MassSpectrum"
match.closest	Relaxed Value Matching
mergeMassPeaks-functions	Merges 'MassPeaks' objects.
monoisotopicPeaks-methods	Finds monoisotopic peaks in a MassPeaks object.
msiSlices-functions	Turn a list of AbstractMassObjects into a mass spectrometry...
plot-methods	Plots an AbstractMassObject object.
plotMsiSlice-methods	Plots a Mass Spectrometry Imaging dataset.
referencePeaks-functions	Creates a reference 'MassPeaks' object.
removeBaseline-methods	Removes the baseline of a MassSpectrum object.
smoothIntensity-methods	Smoothes intensities of a MassSpectrum object.
transformIntensity-methods	Transforms intensities of an AbstractMassObject object.
trim-methods	Trim an AbstractMassObject object.
warp-functions	Run warping functions on AbstractMassObject objects.