CheckAlignment.SJ: Check splice junction data
In MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution
View source: R/Script_PLATE_04_PREPROCESS_3_4_CheckAlignment_SJ.R
CheckAlignment.SJ R Documentation
Check splice junction data
Description
Checks if the metadata aligns with the columns and rows of the matrix for splice junction data prior to PSI computation.
Usage
CheckAlignment.SJ(MarvelObject)
Arguments
MarvelObject
Marvel object. S3 object generated from CreateMarvelObject function.
Value
An object of class S3 with updated slots MarvelObject$SplicePheno, MarvelObject$PSI and MarvelObject$IntronCounts.
Examples
marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))
marvel.demo <- CheckAlignment.SJ(MarvelObject=marvel.demo)
MARVEL documentation built on Oct. 31, 2022, 5:07 p.m.
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View source: R/Script_PLATE_04_PREPROCESS_3_4_CheckAlignment_SJ.R
| CheckAlignment.SJ | R Documentation |
Check splice junction data
Description
Checks if the metadata aligns with the columns and rows of the matrix for splice junction data prior to PSI computation.
Usage
CheckAlignment.SJ(MarvelObject)
Arguments
MarvelObject |
Marvel object. S3 object generated from |
Value
An object of class S3 with updated slots MarvelObject$SplicePheno, MarvelObject$PSI and MarvelObject$IntronCounts.
Examples
marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))
marvel.demo <- CheckAlignment.SJ(MarvelObject=marvel.demo)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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