adhocGene.DE.Gene.10x: Differential gene expression analysis of specified gene
In MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution

View source: R/Script_DROPLET_09_ADHOC_GENE_3_DE_Gene.R

adhocGene.DE.Gene.10x

R Documentation

Differential gene expression analysis of specified gene

Description

Performs differential gene expression analysis specified gene across for all possible pairs of cell groups. The gene and cell groups were defined earlier in adhocGene.TabulateExpression.Gene.10x function.

Usage

adhocGene.DE.Gene.10x(MarvelObject)

Arguments

MarvelObject

Marvel object. S3 object generated from adhocGene.TabulateExpression.Gene.10x function.

Value

An object of class S3 with new slots MarvelObject$adhocGene$DE$Gene$Data.

Examples


marvel.demo.10x <- readRDS(system.file("extdata/data",
                               "marvel.demo.10x.rds",
                               package="MARVEL")
                               )

marvel.demo.10x <- adhocGene.DE.Gene.10x(MarvelObject=marvel.demo.10x)

# Check output
marvel.demo.10x$adhocGene$DE$Gene$Data

MARVEL documentation built on Oct. 31, 2022, 5:07 p.m.