Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.

data | Example data for MAVTn |

design.matrix | Design matrix |

GS | Example data for MAVTn |

GSTplot | GST plot |

Hott2 | Hottelling's T square |

ma.estimate | Estimate of the coefficients |

MAVTgsa-package | OLS and Multivariate Analysis of Variance test for gene set... |

MAVTn | OLS, Hottelling's T2 and MANOVA with n contrasts |

MAVTp | Random Forests-based procedure |

minp | P-values adjustment in permutation |

Tols | Ordinary Least Square test |

Wilksn | Wilk's Lambda for n-group multiple comparisons |

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