GSTplot: GST plot

Description Usage Arguments Note Author(s) References

View source: R/MAVTgsa.R

Description

The GST plot displays the relative direction (in two conditions) and statistics ranking for genes in a gene set.

Usage

1
GSTplot(data, gs, geneset.name = NULL, alpha = 0.01)

Arguments

data

a gene expression data matrix with samples in columns

gs

a binary matrix coded 0 or 1 with genes in rows

geneset.name

The name of the given gene set

alpha

the significance level

Note

R > 2.13.2

Author(s)

Chih-Yi Chien, Chen-An Tsai, Ching-Wei Chang, and James J. Chen

References

Chen,J.J. et al. (2007) Significance analysis of group of genes in expression profiling studies, Bioinformatics, 23, 2104.

Tsai,C.A. et al. (2009) Multivariate analysis of variance test for gene set analysis. Bioinformatics, 25, 897.


MAVTgsa documentation built on May 29, 2017, 8 p.m.