MBI-package: MBI: (M)ultiple-site (B)iodiversity (I)ndices Calculator

In MBI: (M)ultiple-site (B)iodiversity (I)ndices Calculator

Description

Over 20 multiple-site beta diversity indices can be calculated. Later versions will include phylogenetic diversity

Details

Package:	MBI
Type:	Package
Version:	1.0
Date:	2012-10-17
License:	GPL-2

Author(s)

Author: Youhua Chen

Maintainer: Youhua Chen <[e-mail]>

References

Chen Y (2012) MBI: an R package for calculating multiple-site biodiversity indices. Submitted.

Examples

test<-c(90,30,11,5,100,46,19,70,19,1,
        17,0,0,0,30,4,20,26,12,5,37,
		0,25,0,60,30,29,42,36,19,32,
		12,0,0,50,6,39,35,18,0,35,0,
		28,0,70,35,56,49,42,0,81,15,
		36,0,90,45,72,63,54,9,13,0,
		0,5,20,1,4,0,0,0,0,0,0,0,10,
		0,0,0,41,4,72,24,7,0,80,1,64,
		56,48,0,36,0,29,0,40,32,32,2,0,0)
test<-matrix(test,10,10)
batch.calculation(test)

Example output

         cn          ct        crep       crich      wnodfT      wnodfC 
 0.35133041  0.24050633  0.16239316  0.46258503 44.70679012 43.35185185 
     wnodfR       wbeta    harrison          ht          wt          do 
46.06172840  1.42857143  0.04761905  0.00000000  0.00000000  0.95238095 
         cl   msorensen    mjaccard          mn          mt        mrep 
 0.92517007  0.32644218  0.44576720  0.21273848  0.11370370  0.10416226 
      mrich          ml       cfull 
 0.38804233  0.49820239  0.59183673 

MBI documentation built on May 2, 2019, 4:19 a.m.