MCPAN: Multiple Comparisons Using Normal Approximation

Multiple contrast tests and simultaneous confidence intervals based on normal approximation. With implementations for binomial proportions in a 2xk setting (risk difference and odds ratio), poly-3-adjusted tumour rates, biodiversity indices (multinomial data) and expected values under lognormal assumption. Approximative power calculation for multiple contrast tests of binomial and Gaussian data.

Author
Frank Schaarschmidt [aut, cre], Daniel Gerhard [aut], Martin Sill [aut]
Date of publication
2016-01-12 22:25:33
Maintainer
Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
License
GPL-2
Version
1.1-20

View on CRAN

Man pages

binomest
Only for internal use.
binomORci
Simultaneous confidence intervals for odds ratios
binomRDci
Simultaneous confidence intervals for contrasts of...
binomRDtest
Simultaneous test for contrasts of independent binomial...
binomRRci
Simultaneous confidence intervals for ratios of independent...
bronch
Rodent bronchial carcinoma data
censsample
Random data for Poly-k
censsamplef
Random data for Poly-k
corrMatgen
A function to calculate the correlation matrix
estShannon
Estimate the Shannon Index
estShannonf
Estimate the Shannon-Wiener index
estSimpson
Simpson index
estSimpsonf
Estimate the Simpson index from several samples
HCD
Hell Creek Dinosaur Data
liarozole
Marked improvement of psoriasis after application of...
lndest
Point and varioance estimates for expected and log(expected...
lnrci
Simultaneous confidence intervals for expected values...
MCPAN-package
Multiple comparison procedures based on normal approximation...
methyl
NTP bioassay data: effect of methyleugenol on skin fibroma
mosaicplot.Shannonci
Mosaicplot for the data in Shannonci and Simpsonci
multinomORci
Simultaneous confidence intervals for odds ratios comparing...
plotCI
Plot confidence intervals
plotCII
Plot confidence intervals
plot.sci
Plot confidence intervals
poly3ci
Simultaneous confidence intervals for contrasts of...
poly3est
Only for internal use.
poly3estf
Only for internal use.
poly3table
Summarize long term carcinogenicity data
poly3test
Approximate simultaneous test for poly-3-adjusted tumour...
powerbinom
Approximate power for multiple contrast tests of binomial...
powermcpn
Approximative power calculation for multiple contrast tests
powermcpt
Testversion. Power calculation for multiple contrast tests...
PQln
Generalized pivotal quantity for log expected values of...
printfunctions
Print methods for the classes in this package
print.multinomORci
Print out put of multinomORci
scalechoice
Only for internal use.
SCSrank
Compute a rectangular simultaneous confidence set from a...
Shannon
Shannon index
Shannonci
Confidence intervals for multiple contrasts of Shannon...
Simpson
Calculate the Simpson index
Simpsonci
Confidence intervals for differences of Simpson indices
summary.binomORci
Detailed print out for binomORci
summary.binomRDci
Detailed print out for binomRDci
summary.binomRDtest
Detailed print out for binomRDtest
summary.binomRRci
Detailed print out for binomRRci
summary.poly3est
Detailed print out for poly3est
summary.Shannonci
Summary for Shannonci
summary.Simpsonci
Summary function for Simpsonci
Waldci
Simultaneous Wald confidence intervals
Waldtest
Simultaneous Wald tests

Files in this package

MCPAN
MCPAN/NAMESPACE
MCPAN/data
MCPAN/data/bronch.rda
MCPAN/data/liarozole.rda
MCPAN/data/HCD.rda
MCPAN/data/methyl.rda
MCPAN/R
MCPAN/R/Waldci.R
MCPAN/R/poly3table.R
MCPAN/R/multinomORci.R
MCPAN/R/summary.binomRRci.R
MCPAN/R/Shannon.R
MCPAN/R/lndest.R
MCPAN/R/poly3ci.R
MCPAN/R/lndci.R
MCPAN/R/lnrest.R
MCPAN/R/censsamplef.R
MCPAN/R/Waldtest.R
MCPAN/R/poly3est.R
MCPAN/R/mosaicShannonSimpson.R
MCPAN/R/poly3estf.R
MCPAN/R/powermcpt.R
MCPAN/R/powerbinom.R
MCPAN/R/summary.binomRDtest.R
MCPAN/R/print.poly3est.R
MCPAN/R/print.binomRDtest.R
MCPAN/R/censsample.R
MCPAN/R/corrMatgen.R
MCPAN/R/SCSrank.R
MCPAN/R/print.poly3ci.R
MCPAN/R/Simpson.R
MCPAN/R/print.binomRRci.R
MCPAN/R/print.poly3test.R
MCPAN/R/PQln.R
MCPAN/R/binomRDci.R
MCPAN/R/scalechoice.R
MCPAN/R/powermcpn.R
MCPAN/R/binomORci.R
MCPAN/R/binomRDtest.R
MCPAN/R/summary.binomORci.R
MCPAN/R/binomRRci.R
MCPAN/R/summary.binomRDci.R
MCPAN/R/print.binomRDci.R
MCPAN/R/print.binomORci.R
MCPAN/R/plotCI.R
MCPAN/R/lnrci.R
MCPAN/R/poly3test.R
MCPAN/R/binomest.R
MCPAN/MD5
MCPAN/DESCRIPTION
MCPAN/man
MCPAN/man/poly3table.Rd
MCPAN/man/estSimpson.Rd
MCPAN/man/HCD.Rd
MCPAN/man/plot.sci.Rd
MCPAN/man/powerbinom.Rd
MCPAN/man/Simpson.Rd
MCPAN/man/summary.Shannonci.Rd
MCPAN/man/Waldci.Rd
MCPAN/man/censsamplef.Rd
MCPAN/man/binomRDci.Rd
MCPAN/man/summary.poly3est.Rd
MCPAN/man/summary.Simpsonci.Rd
MCPAN/man/scalechoice.Rd
MCPAN/man/poly3estf.Rd
MCPAN/man/binomRRci.Rd
MCPAN/man/plotCII.Rd
MCPAN/man/PQln.Rd
MCPAN/man/lnrci.Rd
MCPAN/man/poly3est.Rd
MCPAN/man/plotCI.Rd
MCPAN/man/Simpsonci.Rd
MCPAN/man/summary.binomRDci.Rd
MCPAN/man/print.multinomORci.Rd
MCPAN/man/liarozole.Rd
MCPAN/man/binomRDtest.Rd
MCPAN/man/lndest.Rd
MCPAN/man/poly3ci.Rd
MCPAN/man/corrMatgen.Rd
MCPAN/man/methyl.Rd
MCPAN/man/estShannon.Rd
MCPAN/man/mosaicplot.Shannonci.Rd
MCPAN/man/binomest.Rd
MCPAN/man/Waldtest.Rd
MCPAN/man/MCPAN-package.Rd
MCPAN/man/summary.binomRDtest.Rd
MCPAN/man/estShannonf.Rd
MCPAN/man/Shannonci.Rd
MCPAN/man/bronch.Rd
MCPAN/man/poly3test.Rd
MCPAN/man/powermcpn.Rd
MCPAN/man/binomORci.Rd
MCPAN/man/estSimpsonf.Rd
MCPAN/man/multinomORci.Rd
MCPAN/man/summary.binomORci.Rd
MCPAN/man/Shannon.Rd
MCPAN/man/printfunctions.Rd
MCPAN/man/powermcpt.Rd
MCPAN/man/summary.binomRRci.Rd
MCPAN/man/SCSrank.Rd
MCPAN/man/censsample.Rd