MCPAN: Multiple Comparisons Using Normal Approximation
Version 1.1-20

Multiple contrast tests and simultaneous confidence intervals based on normal approximation. With implementations for binomial proportions in a 2xk setting (risk difference and odds ratio), poly-3-adjusted tumour rates, biodiversity indices (multinomial data) and expected values under lognormal assumption. Approximative power calculation for multiple contrast tests of binomial and Gaussian data.

Browse man pages Browse package API and functions Browse package files

AuthorFrank Schaarschmidt [aut, cre], Daniel Gerhard [aut], Martin Sill [aut]
Date of publication2016-01-12 22:25:33
MaintainerFrank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
LicenseGPL-2
Version1.1-20
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MCPAN")

Man pages

binomest: Only for internal use.
binomORci: Simultaneous confidence intervals for odds ratios
binomRDci: Simultaneous confidence intervals for contrasts of...
binomRDtest: Simultaneous test for contrasts of independent binomial...
binomRRci: Simultaneous confidence intervals for ratios of independent...
bronch: Rodent bronchial carcinoma data
censsample: Random data for Poly-k
censsamplef: Random data for Poly-k
corrMatgen: A function to calculate the correlation matrix
estShannon: Estimate the Shannon Index
estShannonf: Estimate the Shannon-Wiener index
estSimpson: Simpson index
estSimpsonf: Estimate the Simpson index from several samples
HCD: Hell Creek Dinosaur Data
liarozole: Marked improvement of psoriasis after application of...
lndest: Point and varioance estimates for expected and log(expected...
lnrci: Simultaneous confidence intervals for expected values...
MCPAN-package: Multiple comparison procedures based on normal approximation...
methyl: NTP bioassay data: effect of methyleugenol on skin fibroma
mosaicplot.Shannonci: Mosaicplot for the data in Shannonci and Simpsonci
multinomORci: Simultaneous confidence intervals for odds ratios comparing...
plotCI: Plot confidence intervals
plotCII: Plot confidence intervals
plot.sci: Plot confidence intervals
poly3ci: Simultaneous confidence intervals for contrasts of...
poly3est: Only for internal use.
poly3estf: Only for internal use.
poly3table: Summarize long term carcinogenicity data
poly3test: Approximate simultaneous test for poly-3-adjusted tumour...
powerbinom: Approximate power for multiple contrast tests of binomial...
powermcpn: Approximative power calculation for multiple contrast tests
powermcpt: Testversion. Power calculation for multiple contrast tests...
PQln: Generalized pivotal quantity for log expected values of...
printfunctions: Print methods for the classes in this package
print.multinomORci: Print out put of multinomORci
scalechoice: Only for internal use.
SCSrank: Compute a rectangular simultaneous confidence set from a...
Shannon: Shannon index
Shannonci: Confidence intervals for multiple contrasts of Shannon...
Simpson: Calculate the Simpson index
Simpsonci: Confidence intervals for differences of Simpson indices
summary.binomORci: Detailed print out for binomORci
summary.binomRDci: Detailed print out for binomRDci
summary.binomRDtest: Detailed print out for binomRDtest
summary.binomRRci: Detailed print out for binomRRci
summary.poly3est: Detailed print out for poly3est
summary.Shannonci: Summary for Shannonci
summary.Simpsonci: Summary function for Simpsonci
Waldci: Simultaneous Wald confidence intervals
Waldtest: Simultaneous Wald tests

Functions

HCD Man page
MCPAN Man page
MCPAN-package Man page
PQln Man page Source code
SCSrank Man page Source code
Shannon Man page
Shannonci Man page
Simpson Man page
Simpsonci Man page
Waldci Man page
Waldtest Man page
Y2mat Source code
addmat Source code
as.data.frame.multinomORci Man page Source code
binomORci Man page
binomORci.default Man page
binomORci.formula Man page
binomORci.matrix Man page
binomORci.table Man page
binomRDci Man page
binomRDci.default Man page
binomRDci.formula Man page
binomRDci.matrix Man page
binomRDci.table Man page
binomRDtest Man page
binomRDtest.default Man page
binomRDtest.formula Man page
binomRDtest.matrix Man page
binomRDtest.table Man page
binomRRci Man page
binomRRci.default Man page
binomRRci.formula Man page
binomRRci.matrix Man page
binomRRci.table Man page
binomest Man page
binomest.default Man page
binomest.formula Man page
binomest.table Man page
bronch Man page
censsample Man page
censsamplef Man page
corrMatgen Man page
datcmcheck Source code
estShannon Man page
estShannonf Man page
estSimpson Man page
estSimpsonf Man page
liarozole Man page
lndci Man page Source code
lndest Man page Source code
lnrci Man page Source code
lnrest Man page Source code
makediriprior Source code
methyl Man page
mosaicdiv Man page Source code
multinomORci Man page Source code
oddstrt2logitnames Source code
plot.Shannonci Man page Source code
plot.Simpsonci Man page Source code
plot.binomORci Man page Source code
plot.binomRDci Man page Source code
plot.binomRRci Man page Source code
plot.poly3ci Man page Source code
plot.sci Man page Source code
plotCI Man page Source code
plotCI.confint.glht Man page Source code
plotCI.default Man page Source code
plotCI.sci Man page Source code
plotCI.sci.ratio Man page Source code
plotCII Man page
poly3ci Man page
poly3est Man page
poly3estf Man page
poly3table Man page
poly3test Man page
powerbinom Man page Source code
powerbinomOR Man page Source code
powermcpn Man page Source code
powermcpt Man page Source code
print.Shannonci Man page
print.Simpsonci Man page
print.binomORci Man page
print.binomRDci Man page
print.binomRDtest Man page
print.binomRRci Man page
print.multinomORci Man page Source code
print.poly3ci Man page
print.poly3est Man page
print.poly3test Man page
scalechoice Man page
simpostdiri Source code
summary.Shannonci Man page
summary.Simpsonci Man page
summary.binomORci Man page
summary.binomRDci Man page
summary.binomRDtest Man page
summary.binomRRci Man page
summary.poly3est Man page Source code
vcovA Source code
vcovBL Source code
vcovBLg Source code
waldaddx Source code

Files

NAMESPACE
data
data/bronch.rda
data/liarozole.rda
data/HCD.rda
data/methyl.rda
R
R/Waldci.R
R/poly3table.R
R/multinomORci.R
R/summary.binomRRci.R
R/Shannon.R
R/lndest.R
R/poly3ci.R
R/lndci.R
R/lnrest.R
R/censsamplef.R
R/Waldtest.R
R/poly3est.R
R/mosaicShannonSimpson.R
R/poly3estf.R
R/powermcpt.R
R/powerbinom.R
R/summary.binomRDtest.R
R/print.poly3est.R
R/print.binomRDtest.R
R/censsample.R
R/corrMatgen.R
R/SCSrank.R
R/print.poly3ci.R
R/Simpson.R
R/print.binomRRci.R
R/print.poly3test.R
R/PQln.R
R/binomRDci.R
R/scalechoice.R
R/powermcpn.R
R/binomORci.R
R/binomRDtest.R
R/summary.binomORci.R
R/binomRRci.R
R/summary.binomRDci.R
R/print.binomRDci.R
R/print.binomORci.R
R/plotCI.R
R/lnrci.R
R/poly3test.R
R/binomest.R
MD5
DESCRIPTION
man
man/poly3table.Rd
man/estSimpson.Rd
man/HCD.Rd
man/plot.sci.Rd
man/powerbinom.Rd
man/Simpson.Rd
man/summary.Shannonci.Rd
man/Waldci.Rd
man/censsamplef.Rd
man/binomRDci.Rd
man/summary.poly3est.Rd
man/summary.Simpsonci.Rd
man/scalechoice.Rd
man/poly3estf.Rd
man/binomRRci.Rd
man/plotCII.Rd
man/PQln.Rd
man/lnrci.Rd
man/poly3est.Rd
man/plotCI.Rd
man/Simpsonci.Rd
man/summary.binomRDci.Rd
man/print.multinomORci.Rd
man/liarozole.Rd
man/binomRDtest.Rd
man/lndest.Rd
man/poly3ci.Rd
man/corrMatgen.Rd
man/methyl.Rd
man/estShannon.Rd
man/mosaicplot.Shannonci.Rd
man/binomest.Rd
man/Waldtest.Rd
man/MCPAN-package.Rd
man/summary.binomRDtest.Rd
man/estShannonf.Rd
man/Shannonci.Rd
man/bronch.Rd
man/poly3test.Rd
man/powermcpn.Rd
man/binomORci.Rd
man/estSimpsonf.Rd
man/multinomORci.Rd
man/summary.binomORci.Rd
man/Shannon.Rd
man/printfunctions.Rd
man/powermcpt.Rd
man/summary.binomRRci.Rd
man/SCSrank.Rd
man/censsample.Rd
MCPAN documentation built on May 19, 2017, 9:24 a.m.