MCPAN: Multiple Comparisons Using Normal Approximation

Multiple contrast tests and simultaneous confidence intervals based on normal approximation. With implementations for binomial proportions in a 2xk setting (risk difference and odds ratio), poly-3-adjusted tumour rates, biodiversity indices (multinomial data) and expected values under lognormal assumption. Approximative power calculation for multiple contrast tests of binomial and Gaussian data.

Install the latest version of this package by entering the following in R:
install.packages("MCPAN")
AuthorFrank Schaarschmidt [aut, cre], Daniel Gerhard [aut], Martin Sill [aut]
Date of publication2016-01-12 22:25:33
MaintainerFrank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
LicenseGPL-2
Version1.1-20

View on CRAN

Man pages

binomest: Only for internal use.

binomORci: Simultaneous confidence intervals for odds ratios

binomRDci: Simultaneous confidence intervals for contrasts of...

binomRDtest: Simultaneous test for contrasts of independent binomial...

binomRRci: Simultaneous confidence intervals for ratios of independent...

bronch: Rodent bronchial carcinoma data

censsample: Random data for Poly-k

censsamplef: Random data for Poly-k

corrMatgen: A function to calculate the correlation matrix

estShannon: Estimate the Shannon Index

estShannonf: Estimate the Shannon-Wiener index

estSimpson: Simpson index

estSimpsonf: Estimate the Simpson index from several samples

HCD: Hell Creek Dinosaur Data

liarozole: Marked improvement of psoriasis after application of...

lndest: Point and varioance estimates for expected and log(expected...

lnrci: Simultaneous confidence intervals for expected values...

MCPAN-package: Multiple comparison procedures based on normal approximation...

methyl: NTP bioassay data: effect of methyleugenol on skin fibroma

mosaicplot.Shannonci: Mosaicplot for the data in Shannonci and Simpsonci

multinomORci: Simultaneous confidence intervals for odds ratios comparing...

plotCI: Plot confidence intervals

plotCII: Plot confidence intervals

plot.sci: Plot confidence intervals

poly3ci: Simultaneous confidence intervals for contrasts of...

poly3est: Only for internal use.

poly3estf: Only for internal use.

poly3table: Summarize long term carcinogenicity data

poly3test: Approximate simultaneous test for poly-3-adjusted tumour...

powerbinom: Approximate power for multiple contrast tests of binomial...

powermcpn: Approximative power calculation for multiple contrast tests

powermcpt: Testversion. Power calculation for multiple contrast tests...

PQln: Generalized pivotal quantity for log expected values of...

printfunctions: Print methods for the classes in this package

print.multinomORci: Print out put of multinomORci

scalechoice: Only for internal use.

SCSrank: Compute a rectangular simultaneous confidence set from a...

Shannon: Shannon index

Shannonci: Confidence intervals for multiple contrasts of Shannon...

Simpson: Calculate the Simpson index

Simpsonci: Confidence intervals for differences of Simpson indices

summary.binomORci: Detailed print out for binomORci

summary.binomRDci: Detailed print out for binomRDci

summary.binomRDtest: Detailed print out for binomRDtest

summary.binomRRci: Detailed print out for binomRRci

summary.poly3est: Detailed print out for poly3est

summary.Shannonci: Summary for Shannonci

summary.Simpsonci: Summary function for Simpsonci

Waldci: Simultaneous Wald confidence intervals

Waldtest: Simultaneous Wald tests

Functions

as.data.frame.multinomORci Man page
binomest Man page
binomest.default Man page
binomest.formula Man page
binomest.table Man page
binomORci Man page
binomORci.default Man page
binomORci.formula Man page
binomORci.matrix Man page
binomORci.table Man page
binomRDci Man page
binomRDci.default Man page
binomRDci.formula Man page
binomRDci.matrix Man page
binomRDci.table Man page
binomRDtest Man page
binomRDtest.default Man page
binomRDtest.formula Man page
binomRDtest.matrix Man page
binomRDtest.table Man page
binomRRci Man page
binomRRci.default Man page
binomRRci.formula Man page
binomRRci.matrix Man page
binomRRci.table Man page
bronch Man page
censsample Man page
censsamplef Man page
corrMatgen Man page
estShannon Man page
estShannonf Man page
estSimpson Man page
estSimpsonf Man page
HCD Man page
liarozole Man page
lndci Man page
lndest Man page
lnrci Man page
lnrest Man page
MCPAN Man page
MCPAN-package Man page
methyl Man page
mosaicdiv Man page
multinomORci Man page
plot.binomORci Man page
plot.binomRDci Man page
plot.binomRRci Man page
plotCI Man page
plotCI.confint.glht Man page
plotCI.default Man page
plotCII Man page
plotCI.sci Man page
plotCI.sci.ratio Man page
plot.poly3ci Man page
plot.sci Man page
plot.Shannonci Man page
plot.Simpsonci Man page
poly3ci Man page
poly3est Man page
poly3estf Man page
poly3table Man page
poly3test Man page
powerbinom Man page
powerbinomOR Man page
powermcpn Man page
powermcpt Man page
PQln Man page
print.binomORci Man page
print.binomRDci Man page
print.binomRDtest Man page
print.binomRRci Man page
print.multinomORci Man page
print.poly3ci Man page
print.poly3est Man page
print.poly3test Man page
print.Shannonci Man page
print.Simpsonci Man page
scalechoice Man page
SCSrank Man page
Shannon Man page
Shannonci Man page
Simpson Man page
Simpsonci Man page
summary.binomORci Man page
summary.binomRDci Man page
summary.binomRDtest Man page
summary.binomRRci Man page
summary.poly3est Man page
summary.Shannonci Man page
summary.Simpsonci Man page
Waldci Man page
Waldtest Man page

Files

NAMESPACE
data
data/bronch.rda
data/liarozole.rda
data/HCD.rda
data/methyl.rda
R
R/Waldci.R R/poly3table.R R/multinomORci.R R/summary.binomRRci.R R/Shannon.R R/lndest.R R/poly3ci.R R/lndci.R R/lnrest.R R/censsamplef.R R/Waldtest.R R/poly3est.R R/mosaicShannonSimpson.R R/poly3estf.R R/powermcpt.R R/powerbinom.R R/summary.binomRDtest.R R/print.poly3est.R R/print.binomRDtest.R R/censsample.R R/corrMatgen.R R/SCSrank.R R/print.poly3ci.R R/Simpson.R R/print.binomRRci.R R/print.poly3test.R R/PQln.R R/binomRDci.R R/scalechoice.R R/powermcpn.R R/binomORci.R R/binomRDtest.R R/summary.binomORci.R R/binomRRci.R R/summary.binomRDci.R R/print.binomRDci.R R/print.binomORci.R R/plotCI.R R/lnrci.R R/poly3test.R R/binomest.R
MD5
DESCRIPTION
man
man/poly3table.Rd man/estSimpson.Rd man/HCD.Rd man/plot.sci.Rd man/powerbinom.Rd man/Simpson.Rd man/summary.Shannonci.Rd man/Waldci.Rd man/censsamplef.Rd man/binomRDci.Rd man/summary.poly3est.Rd man/summary.Simpsonci.Rd man/scalechoice.Rd man/poly3estf.Rd man/binomRRci.Rd man/plotCII.Rd man/PQln.Rd man/lnrci.Rd man/poly3est.Rd man/plotCI.Rd man/Simpsonci.Rd man/summary.binomRDci.Rd man/print.multinomORci.Rd man/liarozole.Rd man/binomRDtest.Rd man/lndest.Rd man/poly3ci.Rd man/corrMatgen.Rd man/methyl.Rd man/estShannon.Rd man/mosaicplot.Shannonci.Rd man/binomest.Rd man/Waldtest.Rd man/MCPAN-package.Rd man/summary.binomRDtest.Rd man/estShannonf.Rd man/Shannonci.Rd man/bronch.Rd man/poly3test.Rd man/powermcpn.Rd man/binomORci.Rd man/estSimpsonf.Rd man/multinomORci.Rd man/summary.binomORci.Rd man/Shannon.Rd man/printfunctions.Rd man/powermcpt.Rd man/summary.binomRRci.Rd man/SCSrank.Rd man/censsample.Rd

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