load_patric_db: Load PATRIC database

In MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data

Load PATRIC database

Description

Load PATRIC database

Usage

load_patric_db(x = patric_ftp_path)

Arguments

x	Character path to local or ftp path (.txt or .rds), or data.frame object.

Value

PATRIC database (S3 class 'patric_db')

Examples

patric_db <- load_patric_db()  # will get from PATRIC ftp


# make data.frame with single row
p <- data.frame(genome_id = 1,
                genome_name = "E. coli",
                antibiotic = "amoxicillin",
                measurement = 2.0,
                measurement_unit = "mg/L",
                laboratory_typing_method = "Agar dilution",
                resistant_phenotype = "R")
load_patric_db(p)

MIC documentation built on April 12, 2025, 2:26 a.m.