MKmisc: Miscellaneous Functions from M. Kohl

Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals, and generation of similarity matrices.

Author
Matthias Kohl [aut, cre]
Date of publication
2016-09-23 22:42:57
Maintainer
Matthias Kohl <Matthias.Kohl@stamats.de>
License
LGPL-3
Version
0.993
URLs

View on CRAN

Man pages

0MKmisc-package
Miscellaneous Functions from M. Kohl.
AUC
Compute AUC
AUCtest
AUC-Test
binomCI
Confidence Intervals for Binomial Proportions
corDist
Correlation Distance Matrix Computation
corPlot
Plot of similarity matrix based on correlation
fiveNS
Five-Number Summaries
heatmapCol
Generate colors for heatmaps
HLgofTest
Hosmer-Lemeshow goodness of fit tests.
IQrange
The Interquartile Range
madMatrix
Compute MAD between colums of a matrix or data.frame
madPlot
Plot of similarity matrix based on MAD
mi.t.test
Multiple Imputation Student's t-Test
oneWayAnova
A function for Analysis of Variance
or2rr
Transform OR to RR
pairwiseAUC
Compute pairwise AUCs
pairwiseFC
Compute pairwise fold changes
pairwiseFun
Compute pairwise values for a given function
pairwiselogFC
Compute pairwise log-fold changes
power.diagnostic.test
Power calculations for a diagnostic test
predValues
Compute PPV and NPV.
qboxplot
Box Plots
qbxp.stats
Box Plot Statistics
quantileCI
Confidence Intervals for Quantiles
repMeans
Compute mean of replicated spots
simCorVars
Simulate correlated variables.
simPlot
Plot of a similarity matrix.
ssize.pcc
Sample Size Planning for Developing Classifiers Using High...
stringDist
Function to compute distances between strings
stringSim
Function to compute similarity scores between strings
traceBack
Function to trace back
twoWayAnova
A function for Analysis of Variance

Files in this package

MKmisc
MKmisc/inst
MKmisc/inst/CITATION
MKmisc/NAMESPACE
MKmisc/NEWS
MKmisc/R
MKmisc/R/qboxplot.R
MKmisc/R/ssizePCC.R
MKmisc/R/predValues.R
MKmisc/R/oneWayAnova.R
MKmisc/R/pairwiselogFC.R
MKmisc/R/simPlot.R
MKmisc/R/pairwiseAUC.R
MKmisc/R/stringSim.R
MKmisc/R/corPlot.R
MKmisc/R/corDist.R
MKmisc/R/traceBack.R
MKmisc/R/AUC.R
MKmisc/R/HLgofTest.R
MKmisc/R/pairwiseFun.R
MKmisc/R/quantileCI.R
MKmisc/R/madMatrix.R
MKmisc/R/binomCI.R
MKmisc/R/or2rr.R
MKmisc/R/powerDiagnosticTest.R
MKmisc/R/stringDist.R
MKmisc/R/simCorVars.R
MKmisc/R/twoWayAnova.R
MKmisc/R/heatmapCol.R
MKmisc/R/pairwiseFC.R
MKmisc/R/AUCtest.R
MKmisc/R/mi.t.test.R
MKmisc/R/madPlot.R
MKmisc/R/repMeans.R
MKmisc/R/IQrange.R
MKmisc/R/fiveNS.R
MKmisc/MD5
MKmisc/DESCRIPTION
MKmisc/man
MKmisc/man/traceBack.Rd
MKmisc/man/madPlot.Rd
MKmisc/man/pairwiselogFC.Rd
MKmisc/man/binomCI.Rd
MKmisc/man/heatmapCol.Rd
MKmisc/man/pairwiseFun.Rd
MKmisc/man/simPlot.Rd
MKmisc/man/AUCtest.Rd
MKmisc/man/qbxp.stats.Rd
MKmisc/man/0MKmisc-package.Rd
MKmisc/man/corDist.Rd
MKmisc/man/AUC.Rd
MKmisc/man/ssize.pcc.Rd
MKmisc/man/corPlot.Rd
MKmisc/man/pairwiseFC.Rd
MKmisc/man/fiveNS.Rd
MKmisc/man/IQrange.Rd
MKmisc/man/repMeans.Rd
MKmisc/man/mi.t.test.Rd
MKmisc/man/or2rr.Rd
MKmisc/man/oneWayAnova.Rd
MKmisc/man/stringDist.Rd
MKmisc/man/stringSim.Rd
MKmisc/man/HLgofTest.Rd
MKmisc/man/qboxplot.Rd
MKmisc/man/madMatrix.Rd
MKmisc/man/quantileCI.Rd
MKmisc/man/simCorVars.Rd
MKmisc/man/twoWayAnova.Rd
MKmisc/man/predValues.Rd
MKmisc/man/power.diagnostic.test.Rd
MKmisc/man/pairwiseAUC.Rd