0MKomics-package: Omics Data Analysis.
In MKomics: Omics Data Analysis
Description
Similarity plots based on correlation and median absolute deviation (MAD);
adjusting colors for heatmaps; aggregate technical replicates; calculate
pairwise fold-changes and log fold-changes; computate one- and two-way ANOVA;
simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007>)
for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit)
distance of strings as well as optimal alignment scores for global (Needleman-Wunsch)
and local (Smith-Waterman) alignments with constant gap penalties
(Merkl and Waack (2009), ISBN:978-3-527-32594-8).
Details
Package: MKomics
Type: Package
Version: 0.7
Date: 2021-08-08
Depends: R(>= 3.5.0)
Imports: stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma
Suggests: knitr, rmarkdown
License: LGPL-3
URL: https://www.stamats.de/
library(MKomics)
Author(s)
Matthias Kohl https://www.stamats.de
Maintainer: Matthias Kohl matthias.kohl@stamats.de
MKomics documentation built on Aug. 8, 2021, 5:06 p.m.
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Description
Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; computate one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007>) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
Details
| Package: | MKomics |
| Type: | Package |
| Version: | 0.7 |
| Date: | 2021-08-08 |
| Depends: | R(>= 3.5.0) |
| Imports: | stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma |
| Suggests: | knitr, rmarkdown |
| License: | LGPL-3 |
| URL: | https://www.stamats.de/ |
library(MKomics)
Author(s)
Matthias Kohl https://www.stamats.de
Maintainer: Matthias Kohl matthias.kohl@stamats.de
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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