Man pages for MLMOI
Estimating Frequencies, Prevalence and Multiplicity of Infection
| corrector_numeric | Removes punctuation characters and typos from data entries |
| corrector_string | Removes punctuation characters and typos from data entries |
| decoder_aminoacid | Translates the standard ambiguity codes for nucleotides... |
| decoder_codon | Translates the standard ambiguity codes for nucleotides... |
| decoder_snp | Converts ambeguity codes to represented bases |
| decoder_str | Transforms entries to the desired coding class |
| mle | Derives MLE |
| mle_fixed | Derives profile-likelihood MLE of lineage frequencies |
| MLMOI | MLMOI: An R Package to preprocess molecular data and derive... |
| moi_administrator | Administrator function |
| moi_duplicatefinder | Finds forbidden sample ID repetitions |
| moi_empty | Reports and deletes empty rows/columns |
| moi_export | Exports the dataset in standard format to a new excel file. |
| moi_labels | Finds sample IDs contained in a dataset |
| moi_marker | Extracts lineages of samples at a specific marker |
| moimerge | Merges two molecular datasets. |
| moi_mergemetadata | Merges metadata |
| moi_metadata | Checks the metadata entries |
| moimle | Estimates prevalences, frequency spectra and MOI parameter. |
| moimport | Imports molecular data in various formats and transforms them... |
| moi_nk | Derives lineage prevalence counts |
| moi_prerequisite | Contains different character vectors needed for importing... |
| moi_separator | Finds the most frequent separator |
| moi_warning | Writes warnings into a file |
| withWarnings | Captures all the warnings |
