genetreeSample: Simulated gene tree dataset.

In MSCsimtester: Tests of Multispecies Coalescent Gene Tree Simulator Output

Simulated gene tree dataset.

Description

A dataset of 10,000 gene trees on 5 taxa simulated under the MSC on a species tree.

Format

A text file with 10,000 metric Newick gene trees on the taxa a,b,c,d,e

Details

This simulated dataset was produced by SimPhy \insertRef2016Mallo-simphyMSCsimtester, using the species tree

((((a:10000,b:10000):10000,c:20000):10000,d:30000):10000,e:40000);

with population sizes

c(15000,25000,10000,1,1,1,1,1,12000)

and edges ordered by the ape function read.tree.

File is accessed as system.file("extdata","genetreeSample",package="MSCsimtester"), for example using the ape command:

gts=read.tree(file=system.file("extdata","genetreeSample",package="MSCsimtester") )

References

\insertRef

2016Mallo-simphyMSCsimtester

MSCsimtester documentation built on June 8, 2025, 9:32 p.m.