plotPops: Plot species tree, with population sizes on edges.

In MSCsimtester: Tests of Multispecies Coalescent Gene Tree Simulator Output

Plot species tree, with population sizes on edges.

Description

Plot species tree, with population sizes on edges.

Usage

plotPops(stree, populations)

Arguments

stree	An object of class phylo containing a rooted metric species tree.
populations	A vector containing constant population sizes, one entry for each edge/population in the species tree, with last entry for the population ancestral to the root.

Value

NONE

See Also

pairwiseDist, rootedTriple, plotEdgeOrder

Examples

stree=read.tree(text="(((a:10000,b:10000):10000,c:20000):10000,d:30000);")
plotEdgeOrder(stree)
pops=c(30000,20000,1,1,1,1,10000)
plotPops(stree,pops)

MSCsimtester documentation built on June 8, 2025, 9:32 p.m.