plotEdgeOrder: Plot species tree, with edge numbers on edges.

In MSCsimtester: Tests of Multispecies Coalescent Gene Tree Simulator Output

Plot species tree, with edge numbers on edges.

Description

Under the MSC, each edge in the species tree must be assigned a population size. This function displays the species tree with the edges numbered, to aid the user in entering constant population sizes as an appropriately ordered list.

Usage

plotEdgeOrder(stree)

Arguments

stree

An object of class phylo containing a rooted metric species tree.

Value

NONE

See Also

pairwiseDist, rootedTriple, plotPops

Examples

stree=read.tree(text="(((a:10000,b:10000):10000,c:20000):10000,d:30000);")
plotEdgeOrder(stree)
pops=c(30000,20000,1,1,1,1,10000)
plotPops(stree,pops)

MSCsimtester documentation built on June 8, 2025, 9:32 p.m.