tcga.cn.convert: A Function for Reformatting TCGA DNA Copy Number Matrices
In MVisAGe: Compute and Visualize Bivariate Associations
Description
Usage
Arguments
Value
Examples
View source: R/tcga.cn.convert.R
Description
This function reformats DNA copy number matrices obtained from the Broad Institute's Firehose GDAC
(https://gdac.broadinstitute.org/) so they can be used as input for mVisAGe functions.
Usage
1
Arguments
cn.mat
A matrix of DNA copy number data included in the GISTIC2 output. Typically all_data_by_genes.txt, or a subset thereof,
including the Locus.ID and Cytoband columns.
Value
A matrix of DNA copy number data (rows = genes, columns = samples) that is suitable for input to
mVisAGe functions.
Examples
1
MVisAGe documentation built on May 1, 2019, 8:18 p.m.
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Description Usage Arguments Value Examples
View source: R/tcga.cn.convert.R
Description
This function reformats DNA copy number matrices obtained from the Broad Institute's Firehose GDAC (https://gdac.broadinstitute.org/) so they can be used as input for mVisAGe functions.
Usage
1 |
Arguments
cn.mat |
A matrix of DNA copy number data included in the GISTIC2 output. Typically all_data_by_genes.txt, or a subset thereof, including the Locus.ID and Cytoband columns. |
Value
A matrix of DNA copy number data (rows = genes, columns = samples) that is suitable for input to mVisAGe functions.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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