Description Usage Arguments Value Examples
View source: R/tcga.cn.convert.R
This function reformats DNA copy number matrices obtained from the Broad Institute's Firehose GDAC (https://gdac.broadinstitute.org/) so they can be used as input for mVisAGe functions.
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cn.mat |
A matrix of DNA copy number data included in the GISTIC2 output. Typically all_data_by_genes.txt, or a subset thereof, including the Locus.ID and Cytoband columns. |
A matrix of DNA copy number data (rows = genes, columns = samples) that is suitable for input to mVisAGe functions.
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