MetaDE: MetaDE: Microarray meta-analysis for differentially expressed gene detection

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MetaDE package implements 12 major meta-analysis methods for differential expression analysis.

Author
Xingbin Wang, Jia Li and George C Tseng
Date of publication
2012-08-10 16:11:23
Maintainer
Xingbin Wang<xingbinw@gmail.com>
License
GPL-2
Version
1.0.5

View on CRAN

Man pages

count.DEnumber
Count the number of differentially expressed (DE) genes
draw.DEnumber
A function to plot the number of DE genes against FDR...
heatmap.sig.genes
A function to plot the heatmap of DE genes detectred at a...
ind.analysis
Identify differentially expressed genes in each individual...
ind.cal.ES
Calculate the effect sizes
MetaDE.ES
Identify differentially expressed genes by combining effect...
MetaDE.filter
A function to filter genes
MetaDE.match
Match the probeIds to gene symbol
MetaDE.merge
Merge microarray data sets
MetaDE.minMCC
Identify differentially expressed genes by integrating...
MetaDE-package
MetaDE: Microarray meta-analysis for differentially expressed...
MetaDE.pvalue
Identify differentially expressed genes by combining p-values
MetaDE.rawdata
Identify differentially expressed genes by integrating...
MetaDE.Read
Read data sets into R

Files in this package

MetaDE
MetaDE/MD5
MetaDE/R
MetaDE/R/utility03282012.r
MetaDE/R/meta_analysis03282012.r
MetaDE/R/individual_analysis03282012.r
MetaDE/NAMESPACE
MetaDE/man
MetaDE/man/MetaDE.Read.Rd
MetaDE/man/MetaDE.rawdata.Rd
MetaDE/man/MetaDE.pvalue.Rd
MetaDE/man/MetaDE.minMCC.Rd
MetaDE/man/MetaDE.merge.Rd
MetaDE/man/MetaDE.match.Rd
MetaDE/man/MetaDE.filter.Rd
MetaDE/man/MetaDE.ES.Rd
MetaDE/man/MetaDE-package.Rd
MetaDE/man/ind.cal.ES.Rd
MetaDE/man/ind.analysis.Rd
MetaDE/man/heatmap.sig.genes.Rd
MetaDE/man/draw.DEnumber.Rd
MetaDE/man/count.DEnumber.Rd
MetaDE/DESCRIPTION