areaPermutation | Calculate Area Ratio (AR) of each feature's time interval for... |
curveFitting | Fit longitudinal data |
findSigInterval | Find significant time intervals |
intervalArea | Calculate Area Ratio (AR) of each feature's time interval |
metalonda | Metagenomic Longitudinal Differential Abundance Analysis for... |
metalondaAll | Metagenomic Longitudinal Differential Abundance Analysis for... |
metalonda_test_data | Simulated data of OTU abundance for 2 phenotypes each has 5... |
normalize | Normalize count matrix |
permutation | Permute group labels |
visualizeArea | Visualize significant time interval |
visualizeARHistogram | Visualize Area Ratio (AR) empirical distribution |
visualizeFeature | Visualize Longitudinal Feature |
visualizeFeatureSpline | Visualize the feature trajectory with the fitted Splines |
visualizeTimeIntervals | Visualize all significant time intervals for all tested... |
visualizeVolcanoPlot | Visualize log2 fold-change and significance of each interval... |
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