areaPermutation: Calculate Area Ratio (AR) of each feature's time interval for...

Description Usage Arguments Value References Examples

View source: R/CurveFitting.R

Description

Fits longitudinal samples from the same group using negative binomial or LOWESS for all permutations

Usage

1

Arguments

perm

list has all the permutated models

Value

returns a list of all permutation area ratio

References

Ahmed Metwally (ametwall@stanford.edu)

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
data(metalonda_test_data)
n.sample = 5 # sample size;
n.timepoints = 10 # time point;
n.perm = 3
n.group= 2 # number of group;
Group = factor(c(rep(0,n.sample*n.timepoints), rep(1,n.sample*n.timepoints)))
Time = rep(rep(1:n.timepoints, times = n.sample), 2)
ID = factor(rep(1:(2*n.sample), each = n.timepoints))
points = seq(1, 10, length.out = 10)
aggretage.df = data.frame(Count = metalonda_test_data[1,], Time = Time, Group = Group, ID = ID)
perm = permutation(aggretage.df, n.perm = 3, method = "nbinomial", points)
areaPermutation(perm)

MetaLonDA documentation built on Dec. 18, 2019, 9:38 a.m.