visualizeFeatureSpline: Visualize the feature trajectory with the fitted Splines

In MetaLonDA: Metagenomics Longitudinal Differential Abundance Method

Description

Plot the longitudinal features along with the fitted splines

Usage

visualizeFeatureSpline(
  df,
  model,
  method,
  text,
  group.levels,
  unit = "days",
  ylabel = "Normalized Count",
  col = c("blue", "firebrick"),
  prefix = "Test"
)

Arguments

df	dataframe has the Count , Group, ID, Time
model	the fitted model
method	The fitting method (negative binomial, LOWESS)
text	feature name
group.levels	The two level's name
unit	time unit used in the Time vector (hours, days, weeks, months, etc.)
ylabel	text to be shown on the y-axis of all generated figures (default: "Normalized Count")
col	two color to be used for the two groups (eg., c("red", "blue")).
prefix	prefix to be used to create directory for the analysis results

References

Ahmed Metwally ([e-mail])

MetaLonDA documentation built on Dec. 18, 2019, 9:38 a.m.