Man pages for MetabolAnalyze
Probabilistic Latent Variable Models for Metabolomic Data
| Aitken | Assess convergence of an EM algorithm. |
| BrainSpectra | NMR spectral data from brain tissue samples. |
| estep1 | First E step of the AECM algorithm when fitting a mixture of... |
| estep2 | Second E step of the AECM algorithm when fitting a mixture of... |
| ht | Function to plot a heatmap of BIC values. |
| loadings.jack.plot | Plot loadings and their associated confidence intervals. |
| loadings.plot | Plot loadings. |
| MetabolAnalyze-package | Probabilistic latent variable models for metabolomic data. |
| mppca.loadings.plot | Plot loadings resulting from fitting a MPPCA model. |
| mppca.metabol | Fit a mixture of probabilistic principal components analysis... |
| mppca.scores.plot | Plot scores from a fitted MPPCA model |
| mstep1 | First M-step of the AECM algorithm when fitting a mixture of... |
| mstep2 | Second M-step of the AECM algorithm when fitting a mixture of... |
| ppca.metabol | Fit a probabilistic principal components analysis (PPCA)... |
| ppca.metabol.jack | Fit a probabilistic principal components analysis model to a... |
| ppca.scores.plot | Plot scores from a fitted PPCA model |
| ppcca.metabol | Fit a probabilistic principal components and covariates... |
| ppcca.metabol.jack | Fit a probabilistic principal components and covariates... |
| ppcca.scores.plot | Plot scores from a fitted PPCCA model. |
| scaling | Function to scale metabolomic spectral data. |
| standardize | Function to scale covariates. |
| UrineSpectra | NMR metabolomic spectra from urine samples of 18 mice. |
