demo_data: Example datasets
In MethyBayes: Full Bayesian Partition Model for Identifying Differentially Methylated Loci
Description
Usage
Format
Details
Description
Simulated example datasets to illustrate the format of data and test the
basic functions.
Usage
1
2
3
4
5
6
7
Format
Both of the data sets are data frame with 7 variables:
- chrBase
Factor with 4714 levels, unique ID.
- chr
Factor with 1 level "chr1", Chromosome name.
- base
Integer of base position.
- strand
Factor with 2 levels "F" and "R" for strand.
- coverage
Integer of read coverage, i.e, total number of reads.
- freqC
Numeric percentage (0 - 100) of C bases on that location,
i.e. percentage of reads showing methylation.
- freqT
Numeric percentage of T bases on that location, i.e.
percentage of reads showing un-methylation.
Details
These are the datasets of cases and controls, each have two replicates. Case
1 and case 2 have 4714 and 5197 observations while control 1 and control 2
have 1817 and 5249 observations respectively.
MethyBayes documentation built on May 30, 2017, 4:08 a.m.
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Description Usage Format Details
Description
Simulated example datasets to illustrate the format of data and test the basic functions.
Usage
1 2 3 4 5 6 7 |
Format
Both of the data sets are data frame with 7 variables:
- chrBase
Factor with 4714 levels, unique ID.
- chr
Factor with 1 level "chr1", Chromosome name.
- base
Integer of base position.
- strand
Factor with 2 levels "F" and "R" for strand.
- coverage
Integer of read coverage, i.e, total number of reads.
- freqC
Numeric percentage (0 - 100) of C bases on that location, i.e. percentage of reads showing methylation.
- freqT
Numeric percentage of T bases on that location, i.e. percentage of reads showing un-methylation.
Details
These are the datasets of cases and controls, each have two replicates. Case 1 and case 2 have 4714 and 5197 observations while control 1 and control 2 have 1817 and 5249 observations respectively.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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