MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests

There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.

AuthorChong Wu, Wei Pan
Date of publication2016-03-18 00:08:39
MaintainerChong Wu <wuxx0845@umn.edu>
LicenseGPL-2
Version1.0

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Files

MiSPU
MiSPU/src
MiSPU/src/Makevars
MiSPU/src/MiSPU.cpp
MiSPU/src/Makevars.win
MiSPU/src/RcppExports.cpp
MiSPU/NAMESPACE
MiSPU/data
MiSPU/data/throat.tree.rda
MiSPU/data/dd.rda
MiSPU/data/throat.meta.rda
MiSPU/data/throat.otu.tab.rda
MiSPU/R
MiSPU/R/GUniFrac.R MiSPU/R/Ranking.R MiSPU/R/RcppExports.R MiSPU/R/MiSPU.R MiSPU/R/MiSPUR.R MiSPU/R/simulateData.R
MiSPU/MD5
MiSPU/DESCRIPTION
MiSPU/man
MiSPU/man/throat.otu.tab.Rd MiSPU/man/throat.tree.Rd MiSPU/man/throat.meta.Rd MiSPU/man/GUniFrac.Rd MiSPU/man/dd.Rd MiSPU/man/ranking.Rd MiSPU/man/MiSPU.Rd MiSPU/man/correspLeaves.Rd MiSPU/man/Dirichlet.Rd MiSPU/man/simulateData.Rd MiSPU/man/MiSPU-package.Rd

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