plot_allele_frequency: plot_allele_frequency

In MitoHEAR: Quantification of Mitochondrial DNA Heteroplasmy

plot_allele_frequency

Description

plot_allele_frequency

Usage

plot_allele_frequency(
  position,
  heteroplasmy_matrix,
  allele_matrix,
  cluster,
  names_allele_qc,
  names_position_qc,
  size_text,
  index
)

Arguments

position	Character name of the base to plot.
heteroplasmy_matrix	Third element returned by get_heteroplasmy.
allele_matrix	Fourth element returned by get_heteroplasmy.
cluster	Vector specifying a partition of the samples.
names_allele_qc	Character vector with length equal to n_col of allele_matrix. Each element specifies the name of the base and the allele.
names_position_qc	Character vector with length equal to n_col of allele_matrix. Each element specifies the name of the base.
size_text	Character specifying the size of the text for gridExtra function grid.arrange)
index	Fifth element returned by get_heteroplasmy.

Value

grid.arrange plot of allele frequencies of a specific base across samples divided according to cluster.

Author(s)

Gabriele Lubatti [e-mail]

See Also

https://cran.r-project.org/package=gridExtra

MitoHEAR documentation built on March 18, 2022, 6:47 p.m.