plot_dpt: plot_dpt
In MitoHEAR: Quantification of Mitochondrial DNA Heteroplasmy
View source: R/plotting_functions.R
plot_dpt R Documentation
plot_dpt
Description
plot_dpt
Usage
plot_dpt(position, heteroplasmy_matrix, cluster, time, gam_fit_result, index)
Arguments
position
Character name of the base to plot.
heteroplasmy_matrix
Third element returned by get_heteroplasmy.
cluster
Vector specifying a partition of the samples.
time
Vector of diffusion pseudo time,with length equal to n_row of
heteroplasmy_matrix.
gam_fit_result
Data frame returned by dpt_test.
index
Fifth element returned by get_heteroplasmy.
Value
ggplot2 object of the heteroplasmy level of a specific base across
samples and the GAM fitted curve. The title shows the adjusted p value (FDR)
for the position obtained from get_heteroplasmy.
Author(s)
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de
See Also
MitoHEAR documentation built on March 18, 2022, 6:47 p.m.
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View source: R/plotting_functions.R
| plot_dpt | R Documentation |
plot_dpt
Description
plot_dpt
Usage
plot_dpt(position, heteroplasmy_matrix, cluster, time, gam_fit_result, index)
Arguments
position |
Character name of the base to plot. |
heteroplasmy_matrix |
Third element returned by get_heteroplasmy. |
cluster |
Vector specifying a partition of the samples. |
time |
Vector of diffusion pseudo time,with length equal to n_row of heteroplasmy_matrix. |
gam_fit_result |
Data frame returned by dpt_test. |
index |
Fifth element returned by get_heteroplasmy. |
Value
ggplot2 object of the heteroplasmy level of a specific base across samples and the GAM fitted curve. The title shows the adjusted p value (FDR) for the position obtained from get_heteroplasmy.
Author(s)
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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