Files in MixfMRI

Mixture fMRI Clustering Analysis

configure

MD5

ChangeLog

README.md

NAMESPACE

configure.ac

DESCRIPTION

COPYING

configure.win

cleanup

INSTALL

R/fc_base_ecm.r R/lmt_I_main.r R/fc_init_simple.r R/000_globalVariables.r R/fc_init_prob_simple.r R/fc_decompsigma.r R/cba_cor.r R/lmt_pv_main.r R/cba_cor_3d.r R/04_mb_print.r R/my.plot.r R/fc_ic.r R/logit_ETA_I_information.r R/fc_init_RndEM.r R/gen_maitra.r R/fc_lrt.r R/maitra_dct.r R/fc_logbetanorm.r R/misc.plotfclustpv.r R/fc_lrt4_betaab.r R/fc_est_beta.r R/fc_init_qnorm_extend.r R/summarized.overlap.r R/fc_dmvn.r R/yy_AnalyzeFMRI_spatial.mixture.r R/fdr_ss.r R/utility.r R/fc_my_c_tools.r R/lmt_I_information.r R/00_fclust.r R/zzz.r R/fc_init_prob_extend.r R/maitra_smooth2d.r R/misc.plotfclust.r R/fc_set_global.r R/fc_base_apecma.r R/03_print_object.r R/cba_cor_2d.r R/lmt_pv_information.r R/fc_lrt2_org.r R/fc_lrt3_betamean.r R/fc_init.r R/fc_lrt2.r R/fc_init_extend.r R/qvalue.r R/fc_indep_logL.r R/fc_base_em.r R/fc_mle_SIGMA.r R/fc_init_param.r R/my.color.r R/fc_init_qnorm_simple.r R/workflow.r R/post_I_information.r R/yy_AnalyzeFMRI_threshold.r

src/my_c_em.c

src/Makevars.win

src/my_c_apecm.c

src/Makevars.in

src/zzz.c

src/spatial.c

inst/CITATION

inst/doc/MixfMRI-guide.pdf

inst/doc/MixfMRI-guide.Rnw

inst/workflow/spmd/3d_V/00-set_condition.r

inst/workflow/spmd/3d_V/run.sh

inst/workflow/spmd/3d_common/14-get_ic_lrt.r inst/workflow/spmd/3d_common/33-spmd_merge_lrt2.r inst/workflow/spmd/3d_common/13-spmd_merge_lrt2.r inst/workflow/spmd/3d_common/05-plot_clust.r inst/workflow/spmd/3d_common/04-get_ic_lrt.r inst/workflow/spmd/3d_common/15-plot_clust.r inst/workflow/spmd/3d_common/00-set_condition.r inst/workflow/spmd/3d_common/23-spmd_merge_lrt2.r inst/workflow/spmd/3d_common/01-plot_pv.r inst/workflow/spmd/3d_common/05-plot_ic.r inst/workflow/spmd/3d_common/33-spmd_merge_lrt4.r inst/workflow/spmd/3d_common/02-spmd_fclust.r inst/workflow/spmd/3d_common/33-spmd_merge_lrt3.r inst/workflow/spmd/3d_common/24-get_ic_lrt.r inst/workflow/spmd/2d_noX/00-set_condition.r

inst/workflow/spmd/2d_noX/run.sh

inst/workflow/spmd/2d_common/14-get_ic_lrt.r inst/workflow/spmd/2d_common/33-spmd_merge_lrt2.r inst/workflow/spmd/2d_common/13-spmd_merge_lrt2.r inst/workflow/spmd/2d_common/05-plot_clust.r inst/workflow/spmd/2d_common/04-get_ic_lrt.r inst/workflow/spmd/2d_common/06-plot_legend.r inst/workflow/spmd/2d_common/15-plot_clust.r inst/workflow/spmd/2d_common/00-set_condition.r inst/workflow/spmd/2d_common/23-spmd_merge_lrt2.r inst/workflow/spmd/2d_common/01-plot_pv.r inst/workflow/spmd/2d_common/05-plot_ic.r inst/workflow/spmd/2d_common/33-spmd_merge_lrt4.r inst/workflow/spmd/2d_common/02-spmd_fclust.r inst/workflow/spmd/2d_common/33-spmd_merge_lrt3.r inst/workflow/spmd/2d_common/24-get_ic_lrt.r inst/workflow/spmd/2d_V/00-set_condition.r

inst/workflow/spmd/2d_V/run.sh

inst/workflow/spmd/3d_noX/00-set_condition.r

inst/workflow/spmd/3d_noX/run.sh

inst/workflow/spmd/2d_I/00-set_condition.r

inst/workflow/spmd/2d_I/run.sh

inst/workflow/spmd/3d_I/00-set_condition.r

inst/workflow/spmd/3d_I/run.sh

inst/workflow/timing/run.sh

inst/workflow/timing/02-spmd_fclust.r inst/workflow/simulation/run_summary_collect.r

inst/workflow/simulation/create_simu.txt

inst/workflow/simulation/run_summary_collect_new4.r inst/workflow/simulation/run_summary_collect_new5.r inst/workflow/simulation/simu_2d/create_smooth_rep.r inst/workflow/simulation/simu_2d/create_smooth_simu.r inst/workflow/simulation/simu_2d/create_simu.r inst/workflow/simulation/simu_2d/create_rep.r

inst/workflow/simulation/simu_2d/run_summary.sh

inst/workflow/simulation/simu_2d/script_summary/summary_plotfclust.r inst/workflow/simulation/simu_2d/script_summary/summary_jaccard_table.r inst/workflow/simulation/simu_2d/script_summary/summary_table_new5.r inst/workflow/simulation/simu_2d/script_summary/summary_table_new4.r inst/workflow/simulation/simu_2d/script_summary/summary.r inst/workflow/simulation/simu_2d/script_summary/summary_table.r inst/workflow/simulation/simu_2d/script_summary/summary_plotpv.r inst/workflow/simulation/simu_2d/script_summary/summary_jaccard_alternative.r inst/workflow/simulation/simu_2d/script_summary/summary_plotdensity.r inst/workflow/simulation/simu_2d/script_summary/summary_alternative.r

inst/workflow/simulation/simu_2d/script/run_1.sh

inst/workflow/simulation/simu_2d/script/00-set_condition.r

inst/workflow/simulation/simu_2d/script/run_2.sh

demo/fclust3d.r demo/cba_cor.r demo/mpi_fclust3d.r demo/maitra_phantom.r demo/alter_shepp1fMRI.r demo/shepp.r demo/pval_2d_complex.r demo/test_noX.r

demo/00Index

demo/pval_2d_mag.r demo/test_toy.r demo/alter_shepp2fMRI.r demo/mpi_fclust2d.r demo/alter_logor.r demo/logor_stat.r demo/mpi_test_toy.r demo/gen_data.r demo/fclust2d.r demo/maitra_2d_fclust.r demo/test_pstats.r demo/lmt_I.r demo/maitra_2d.r demo/logit_post_I.r demo/logit_ETA_I.r

vignettes/build_pdf.sh

vignettes/MixfMRI-guide.Rnw

vignettes/MixfMRI-include/00-preamble.tex

vignettes/MixfMRI-include/01-copyright.tex

vignettes/MixfMRI-include/maitra_2d_fclust.pdf vignettes/MixfMRI-include/maitra_2d.pdf

vignettes/MixfMRI-include/02-examples.tex

vignettes/MixfMRI-include/01-introduction.tex

vignettes/MixfMRI-include/MixfMRI.bib

vignettes/MixfMRI-include/my_jss.cls

vignettes/MixfMRI-include/maitra_phantom.pdf

data/datalist

data/pstats.rda

data/envir.r

data/toy.rda

data/pval.rda

data/control.r

data/2dphant.rda

man/u1_summarized.overlap.Rd man/d1_plot.Rd man/f1_lmt_I_pv.Rd man/e3_smooth.Rd man/u4_cba_cor.Rd man/00_MixfMRI-package.Rd man/f2_logit_ETA.Rd man/a1_fclust.Rd man/y2_Threshold.RF.Rd man/y4_Threshold.FDR.Rd man/e2_density.Rd man/11_d_control.Rd man/b1_initial.Rd man/u3_fdr_ss.Rd man/d2_print.Rd man/b2_algorithm.Rd man/c1_test.Rd man/y1_Threshold.Bonferroni.Rd man/f3_post_I.Rd man/zz_internal.Rd man/y3_EC.3D.Rd man/f4_logor_stat.Rd man/22_d_data.Rd man/u2_qvalue.Rd man/e1_simulation.Rd man/y5_cluster.threshold.Rd

MixfMRI documentation built on Sept. 8, 2023, 5:06 p.m.