Nothing
### For LMT.
### Copy from EMCluster.
### For identity cov matrix only.
lmt.I <- function(fcobj.0, fcobj.a, X.gbd, PV.gbd, tau = 0.5,
n.mc.E.delta = 1000, n.mc.E.chi2 = 1000, verbose = FALSE){
if((!inherits(fcobj.0, "fclust")) ||
(!inherits(fcobj.a, "fclust"))){
stop("fcobj.0 and fcobj.a should be both in \"fclust\" class.")
}
if(fcobj.0$param$K == fcobj.a$param$K){
stop("fcobj.0 and fcobj.a should have different numbers of clusters.")
}
### Reset global
set.global(X.gbd, PV.gbd)
### x
x <- list(X.gbd = X.gbd, PV.gbd = PV.gbd)
### K
k.0 <- fcobj.0$param$K
k.a <- fcobj.a$param$K
### logL
ll.0 <- fcobj.0$param$logL
ll.a <- fcobj.a$param$logL
### Likelihood ratio statistics
delta.hat <- fcobj.a$param$logL - fcobj.0$param$logL
E.delta <- get.E.delta.I(x, fcobj.0, fcobj.a, tau = tau, n.mc = n.mc.E.delta)
### Chi-squared statistics
E.chi2.0 <- get.E.chi2.I(x, fcobj.0, fcobj.a, "0", tau = tau,
n.mc = n.mc.E.chi2, verbose = verbose)
E.chi2.a <- get.E.chi2.I(x, fcobj.0, fcobj.a, "a", tau = tau,
n.mc = n.mc.E.chi2, verbose = verbose)
### Testing statistics.
T <- 2 * (delta.hat - E.delta)
### p-values.
pv.0 <- pchisq.my(T, E.chi2.0[1], E.chi2.0[2], lower.tail = FALSE)
pv.a <- pchisq.my(T, E.chi2.a[1], E.chi2.a[2], lower.tail = FALSE)
pv <- pv.0 * tau + pv.a * (1 - tau)
### Return.
ret <- list(K.0 = k.0, K.a = k.a, ll.0 = ll.0, ll.a = ll.a,
delta.hat = delta.hat,
E.delta = E.delta, E.chi2.0 = E.chi2.0, E.chi2.a = E.chi2.a,
T = T, pv.0 = pv.0, pv.a = pv.a, pv = pv)
class(ret) <- "lmt.I"
ret
} # End of lmt.I().
print.lmt.I <- function(x, digits = max(4, getOption("digits") - 3), ...){
K.0 <- x$K.0
K.a <- x$K.a
ll.0 <- x$ll.0
ll.a <- x$ll.a
delta.hat <- x$delta.hat
E.delta <- x$E.delta
E.chi2.0 <- x$E.chi2.0
E.chi2.a <- x$E.chi2.a
T <- x$T
pv.0 <- x$pv.0
pv.a <- x$pv.a
pv <- x$pv
cat("- H.0: K = ", K.0, " vs H.a: K = ", K.a, "\n",
" ll.0 = ", ll.0, ", ll.a = ", ll.a, "\n",
" df.0 = ", E.chi2.0[1], ", nc.0 = ", E.chi2.0[2],
", df.a = ", E.chi2.a[1], ", nc.a = ", E.chi2.a[2], "\n",
" delta.hat = ", delta.hat, ", E.delta = ", E.delta,
", T = ", T, "\n",
" pv.0 = ", pv.0, ", pv.a = ", pv.a, " pv = ", pv,
"\n", sep = "")
invisible()
} # End of print.lmt.I().
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