| combinedModuleList | a list of combined modules |
| corumModuleList | modules from CORUM |
| moduleCombiding | Combine modules from different resources. |
| moduleFunctionComparing | Compare functions of target modules |
| moduleHeatmap | moduleHeatmap |
| moduleList | ncRNA target moudles |
| moduleMappingID | moduleMappingID |
| MoonFinder-package | MoonFinder |
| moonlightingCoefficient | moonlightingCoefficient |
| pcdqModuleList | pcdqModuleList |
| ppi | ppi |
| predModuleList | predicted modules |
| rna2mod | rna2mod |
| rna2module | RNA-module association matrix |
| rna2protein | rna2protein |
| SDI | Shannon diversity index |
| simMatBP.Jiang | a semantic similarity (Jiang) matrix |
| simMatBP.Lin | a semantic similarity (Lin) matrix |
| simMatBP.Rel | a semantic similarity (Rel) matrix |
| simMatBP.Resnik | a semantic similarity (Resnik) matrix |
| simMatBP.Wang | a semantic similarity (Wang) matrix~ |
| uniGene | Background gene symbols |
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