Description Usage Arguments Value Author(s) References Examples
View source: R/moduleHeatmap.R
Draw a heatmap to illustrate the protein modules mediated by an RNA.
1 | moduleHeatmap(rna, rna2mod, modList, net)
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rna |
RNA symbol. |
rna2mod |
N x M 0-1 binary matrix of N RNA and M module. |
modList |
a list of protien moudles. |
net |
a protein-protein interaction network compiled in igraph. |
a heatmap figure indicating protein modules targeted by an RNA.
Lixin Cheng <easonlcheng@gmail.com>
MoonFinder: a framework for the identification of moonlighting non-coding RNAs.
1 2 3 4 5 6 7 | library(igraph)
data(ppi)
data(rna2module)
data(moduleList)
g <- graph.edgelist(ppi,directed=FALSE)
moduleHeatmap("DIRC3",rna2module,moduleList,g)
# moduleHeatmap("CRNDE",rna2module,moduleList,g)
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