moduleMappingID: moduleMappingID

In MoonFinder: Identify Moonlighting ncRNAs

Description

Map protein ID for a list of modules.

Usage

moduleMappingID(inputList, ID1 = "UNIPROT", ID2 = "SYMBOL", thdMS = 5)

Arguments

inputList	a list of modules with proteins in ID1.
ID1	ID type of proteins of the input moduels.
ID2	ID type of protiens of the output moduels.
thdMS	mimimum module size.

Value

outputList

a list of modules with proteins in ID2.

Author(s)

Lixin Cheng <[e-mail]>

References

MoonFinder: a framework for the identification of moonlighting non-coding RNAs.

Examples

m1 = c("Q15021", "Q9BPX3", "Q15003", "O95347", "Q9NTJ3")
m2 = c("Q92828", "Q13227", "O15379", "O75376", "O60907", "Q9BZK7")
m3= c("P61160", "P61158", "O15143", "O15144", "O15145", "P59998", "O15511")
uniprotModuleList = list(m1,m2,m3)
symbolModuleList = moduleMappingID(uniprotModuleList)
names(symbolModuleList) = paste0("M",1:length(symbolModuleList))
head(symbolModuleList)

MoonFinder documentation built on Oct. 30, 2019, 11:31 a.m.