moduleCombiding: Combine modules from different resources.

In MoonFinder: Identify Moonlighting ncRNAs

Description

Combine modules with high overlapping score.

Usage

moduleCombiding(inputList, OScutoff = 0.5)

Arguments

inputList	a list of protein modules.
OScutoff	the threshold of overlapping score.

Details

Combine modules from different resources. For example, one set is computational predicted while the other sets are collected from databases.

Value

outputList

a list of combined modules.

Author(s)

Lixin Cheng <[e-mail]>

References

MoonFinder: a framework for the identification of moonlighting non-coding RNAs.

Examples

m1 = c("Q15021", "Q9BPX3", "Q15003", "O95347", "Q9NTJ3")
m2 = c("Q92828", "Q13227", "O15379", "O75376", "O60907", "Q9BZK7")
m3= c("P61160", "P61158", "O15143", "O15144", "O15145", "P59998", "O15511")
m4 = c("Q92828", "Q13227", "O15379", "O75376", "Q15021")
m5= c("P61160", "P61158", "O15143", "O15144", "O15145", "Q9NTJ3")
mList1 = list(m1,m2,m3,m4,m5)
mList2 = moduleCombiding(mList1,OScutoff = 0.5)
head(mList2)

MoonFinder documentation built on Oct. 30, 2019, 11:31 a.m.