CAC: calculate common allometric component

Description Usage Arguments Value References Examples

View source: R/CAC.r

Description

calculate common allometric component

Usage

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CAC(x, size, groups = NULL, log = FALSE)

Arguments

x

datamatrix (e.g. with PC-scores) or 3D-array with landmark coordinates

size

vector with Centroid sizes

groups

grouping variable

log

logical: use log(size)

Value

CACscores

common allometric component scores

CAC

common allometric component

x

(group-) centered data

sc

CAC reprojected into original space by applying CAC %*% x

RSCscores

residual shape component scores

RSC

residual shape components

gmeans

groupmeans

CS

the centroid sizes (log transformed if log = TRUE)

References

Mitteroecker P, Gunz P, Bernhard M, Schaefer K, Bookstein FL. 2004. Comparison of cranial ontogenetic trajectories among great apes and humans. Journal of Human Evolution 46(6):679-97.

Examples

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data(boneData)
proc <- procSym(boneLM)
pop.sex <- name2factor(boneLM,which=3:4)
cac <- CAC(proc$rotated,proc$size,pop.sex)
plot(cac$CACscores,cac$size)#plot scores against Centroid size
cor.test(cac$CACscores,cac$size)#check for correlation
#visualize differences between large and small on the sample's consensus
## Not run: 
large <- restoreShapes(max(cac$CACscores),cac$CAC,proc$mshape)
small <- restoreShapes(min(cac$CACscores),cac$CAC,proc$mshape)
deformGrid3d(small,large,ngrid=0)

## End(Not run)

Morpho documentation built on Sept. 9, 2021, 9:07 a.m.