Morpho
Calculations and Visualisations Related to Geometric Morphometrics

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144
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Morpho: Calculations and Visualisations Related to Geometric Morphometrics
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API

API for Morpho
Calculations and Visualisations Related to Geometric Morphometrics

Global functions
.CVAcrova Source code
.CVAdists Source code
.bindArr2 Source code
.calcTang_U Source code
.calcTang_U_s Source code
.difplotLM Source code
.difplotLM2D Source code
.fx Source code
.groupPCAcrova Source code
.pcaplot3d Source code
CAC Man page Source code
CVA Man page
CreateL Man page Source code
GetPhi Source code
LPS2RAS Man page Source code
Morpho Man page
Morpho-package Man page
NNshapeReg Man page Source code
PCdist Man page Source code
ProcGPA Man page Source code
RGB2Grey Source code
RegScore Man page Source code
addo Source code
adnormals Man page
align2procSym Man page Source code
ang Source code
angM Source code
angle.calc Man page Source code
anglePvalue Source code
angleTest Man page Source code
anonymize Man page Source code
applyTransform Man page Source code
applyTransform.default Man page Source code
applyTransform.matrix Man page Source code
applyTransform.mesh3d Man page Source code
areaSphere Man page Source code
areaSpherePart Man page Source code
armaGinv Man page Source code
arrMean3 Man page Source code
array2list Man page Source code
asymPermute Man page Source code
barycenter Man page Source code
bindArr Man page Source code
binfun Source code
bone1 Man page
bone2 Man page
bone3 Man page
boneData Man page
boneLM Man page
cExtract Man page Source code
cSize Man page Source code
calcGamma Source code
calcProcDGamma Source code
checkLM Man page Source code
checkNA Man page Source code
classify Man page Source code
classify.CVA Man page Source code
classify.bgPCA Man page Source code
classify.typprob Man page Source code
closemeshKD Man page Source code
colorMesh Source code
colors Man page
computeArea Man page Source code
computeRV Source code
computeTransform Man page Source code
conv2backf Man page
covDist Man page Source code
covPCA Man page Source code
covW Man page Source code
createAtlas Man page Source code
createDisplayInfo Source code
createMissingList Man page Source code
crossProduct Man page Source code
crossp Man page
curveSmooth Source code
cutMeshPlane Man page Source code
cutSpace Man page Source code
cylinder Source code
data2platonic Man page Source code
deform.grid Man page
deformGrid2d Man page Source code
deformGrid3d Man page Source code
deprecated Man page
dist2plane Source code
edgePlaneIntersect Source code
eigenPCA Source code
equidistantCurve Man page Source code
equidistantCurveHelper Source code
exVar Man page Source code
exVar.lm Man page Source code
exVar.mvr Man page Source code
export Man page Source code
export.meshDist Man page Source code
facenormals Man page Source code
fastKmeans Man page Source code
file2mesh Man page Source code
find.outliers Man page Source code
fixLMmirror Man page Source code
fixLMmirror.array Man page Source code
fixLMmirror.matrix Man page Source code
fixLMtps Man page Source code
geoDist Source code
getFaces Man page Source code
getLocalStretchNoArticulate Source code
getMeaningfulPCs Man page Source code
getOuterViewpoints Man page Source code
getPCscores Man page Source code
getPCtol Man page Source code
getPLSCommonShape Man page Source code
getPLSfromScores Man page Source code
getPLSscores Man page Source code
getPointAlongOutline Man page Source code
getSides Man page Source code
getTrafo4x4 Man page Source code
getTrafo4x4.rotonto Man page Source code
getTrafoRotaxis Man page Source code
getVisibleVertices Man page Source code
groupPCA Man page Source code
histGroup Man page Source code
homg2mat Source code
icpmat Man page Source code
ignoreNA Source code
invertFaces Man page Source code
kendalldist Man page Source code
line2plane Man page Source code
lineplot Man page Source code
list2array Man page Source code
longnose.lm Man page
mat2homg Source code
mat3x3tomat4x4 Source code
mcNNindex Man page Source code
mergeMeshes Man page Source code
mesh2grey Man page Source code
mesh2obj Man page Source code
mesh2ply Man page Source code
meshDist Man page Source code
meshDist.matrix Man page Source code
meshDist.mesh3d Man page Source code
meshPlaneIntersect Man page Source code
meshcube Man page Source code
meshres Man page Source code
mirror Man page Source code
mirror.matrix Man page Source code
mirror.mesh3d Man page Source code
mirror2plane Man page Source code
mirror2plane.matrix Man page Source code
mirror2plane.mesh3d Man page Source code
name2factor Man page Source code
name2num Man page Source code
nonzero Source code
nose Man page
obj2mesh Man page Source code
orp Source code
pcAlign Man page Source code
pcAlign.matrix Man page Source code
pcAlign.mesh3d Man page Source code
pcaplot3d Man page
pcaplot3d.nosymproc Man page Source code
pcaplot3d.symproc Man page Source code
permudist Man page Source code
permuvec Man page Source code
place.patch Source code
placePatch Man page Source code
plot.slider3d Man page Source code
plotAtlas Man page Source code
plotNormals Man page Source code
pls2B Man page Source code
plsCoVar Man page Source code
plsCoVarCommonShape Man page Source code
ply2mesh Man page
points2plane Man page Source code
prcompfast Man page Source code
predict.CVA Man page Source code
predict.bgPCA Man page Source code
predictPLSfromData Man page Source code
predictPLSfromScores Man page Source code
predictRelWarps Man page Source code
predictShape.lm Man page Source code
print.CVA Source code
print.bgPCA Source code
print.classify Source code
print.nosymproc Source code
print.pls2B Source code
print.symproc Source code
print.typprob Source code
probpost Source code
proc.weight Man page Source code
procAOVsym Man page Source code
procSym Man page Source code
projRead Man page Source code
qqmat Man page Source code
quad2trimesh Man page Source code
r2morphoj Man page Source code
r2morphologika Man page Source code
ray2mesh Man page Source code
read.csv.folder Man page Source code
read.fcsv Man page Source code
read.lmdta Man page Source code
read.mpp Man page Source code
read.obj Source code
read.pts Man page Source code
read.slicerjson Man page Source code
readLandmarks.csv Man page Source code
readallTPS Man page Source code
regdist Man page
regdist.raw Man page Source code
relWarps Man page Source code
relaxLM Man page Source code
relaxLM.matrix Man page Source code
relaxLM.mesh3d Man page Source code
render Man page Source code
render.matrixDist Man page Source code
render.meshDist Man page Source code
resampleCurve Man page Source code
restoreFromPCA Man page Source code
restoreShapes Man page Source code
retroDeform3d Man page Source code
retroDeformMesh Man page Source code
rmUnrefVertex Man page Source code
rmVertex Man page Source code
rot.proc Source code
rotaxis3d Man page Source code
rotaxis3d.matrix Man page Source code
rotaxis3d.mesh3d Man page Source code
rotaxisMat Man page Source code
rotmesh.onto Man page Source code
rotonmat Man page Source code
rotonto Man page Source code
rotreverse Man page Source code
rotreverse.matrix Man page Source code
rotreverse.mesh3d Man page Source code
scalemesh Man page Source code
shortnose.lm Man page
shortnose.mesh Man page
showPC Man page Source code
skin1 Man page
skin2 Man page
skin3 Man page
skin4 Man page
skull_0144_ch_fe.mesh Man page
slider2d Man page Source code
slider3d Man page Source code
solutionSpace Man page Source code
sortCurve Man page Source code
svd2B Source code
symmetrize Man page Source code
tangentPlane Man page Source code
tanplan Man page
tps2d Man page
tps3d Man page Source code
typprob Man page Source code
typprobClass Man page Source code
unrefVertex Man page Source code
updateIndices Man page Source code
updateNormals Man page Source code
vecx Man page Source code
vert2points Man page Source code
virtualMeshScan Man page Source code
warp.mesh Man page
warpmovie2d Man page Source code
warpmovie3d Man page
warpmovie3d.matrix Man page Source code
warpmovie3d.mesh3d Man page Source code
write.fcsv Man page Source code
write.obj Source code
write.pts Man page Source code
write.slicerjson Man page Source code
Morpho documentation built on Feb. 16, 2023, 10:51 p.m.

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