render: plot or save the results of meshDist

In Morpho: Calculations and Visualisations Related to Geometric Morphometrics

plot or save the results of meshDist

Description

plot or save the results of meshDist

Usage

render(x, ...)

## S3 method for class 'meshDist'
render(
  x,
  from = NULL,
  to = NULL,
  steps = NULL,
  ceiling = NULL,
  uprange = NULL,
  tol = NULL,
  tolcol = NULL,
  rampcolors = NULL,
  NAcol = NULL,
  displace = FALSE,
  shade = TRUE,
  sign = NULL,
  add = FALSE,
  scaleramp = NULL,
  titleplot = "Distance in mm",
  ...
)

## S3 method for class 'matrixDist'
render(
  x,
  from = NULL,
  to = NULL,
  steps = NULL,
  ceiling = NULL,
  uprange = NULL,
  tol = NULL,
  tolcol = NULL,
  type = c("s", "p"),
  radius = NULL,
  rampcolors = NULL,
  NAcol = NULL,
  displace = FALSE,
  sign = NULL,
  add = FALSE,
  scaleramp = FALSE,
  titleplot = "Distance in mm",
  ...
)

export(x, ...)

## S3 method for class 'meshDist'
export(
  x,
  file = "default",
  imagedim = "100x800",
  titleplot = "Distance in mm",
  ...
)

Arguments

x	object of class meshDist
...	for render.meshDist: additional arguments passed to shade3d. See material3d for details.
from	numeric: minimum distance to color; default is set to 0 mm
to	numeric: maximum distance to color; default is set to the maximum distance
steps	integer: determines how many intermediate colors the color ramp has.
ceiling	logical: if TRUE, the next larger integer of "to" is used
uprange	numeric between 0 and 1: restricts "to" to a quantile of "to", if to is NULL.
tol	numeric: threshold to color distances within this threshold according to tolcol.
tolcol	a custom color to color vertices below a threshold defined by tol. Default is green.
rampcolors	character vector: specify the colors which are used to create a colorramp.
NAcol	character: specify color for values outside the range defined by from and to.
displace	logical: if TRUE, displacement vectors between original and closest points are drawn colored according to the distance.
shade	logical: if FALSE, the rendering of the colored surface will be supressed.
sign	logical: request signed distances to be visualised.
add	logical: if TRUE, visualization will be added to the rgl window currently in focus
scaleramp	if TRUE the ramp colors get scaled symmetrically into positive and negative direction.
titleplot	character: axis description of heatmap.
type	character: "s" shows coordinates as spheres, while "p" shows 3D dots.
radius	determines size of spheres; if not specified, optimal radius size will be estimated by centroid size of the configuration.
file	character: filename for mesh and image files produced. E.g. "mydist" will produce the files mydist.ply and mydist.png
imagedim	character of pattern "100x200" where 100 determines the width and 200 the height of the image.

Details

Visualise or save the results of meshDist to disk.

render.meshDist renders the colored mesh and displays the color ramp and returns an object of class "meshDist". export.meshDist exports the colored mesh as ply file and the color chart as png file.

Author(s)

Stefan Schlager

See Also

meshDist, shade3d

Morpho documentation built on June 22, 2024, 7:19 p.m.