FeaturesOfCluster: List all features present in a selected cluster of objects

In MosaiClusteR: An Umbrella Framework for Multi-Source and Multi-Omics Clustering

List all features present in a selected cluster of objects

Description

The function FeaturesOfCluster lists the number of features objects of the cluster have in common. A threshold can be set selecting among how many objects of the cluster the features should be shared. An optional plot of the features is available.

Usage

FeaturesOfCluster(
  leadCpds,
  data,
  threshold = 1,
  plot = TRUE,
  cexB = 1.1,
  cexR = 1.1,
  cexN = 1.1,
  plottype = "new",
  location = NULL
)

Arguments

leadCpds	A character vector containing the objects one wants to investigate in terms of features.
data	The data matrix.
threshold	The number of objects the features at least should be shared amongst. Default is set to 1.
plot	Logical. Indicates whether or not a BinFeaturesPlot should be set up. Default is TRUE.
cexB	Font size of the bottom (object) labels in the plot. Default is 1.1.
cexR	Font size of the right (feature) labels in the plot. Default is 1.1.
cexN	Font size of the data-name label in the plot. Default is 1.1.
plottype	Should be one of "pdf","new" or "sweave". Default is "new".
location	If plottype is "pdf", a location should be provided. Default is NULL.

Value

A list with 2 items: the number of shared features among the objects, and a character vector of the plotted features.

Examples

## Not run: 
data(fingerprintMat)

Lead=rownames(fingerprintMat)[1:5]

FeaturesOfCluster(leadCpds=Lead,data=fingerprintMat,
threshold=1,plot=TRUE,plottype="new",location=NULL)

## End(Not run)

MosaiClusteR documentation built on Oct. 25, 2026, 1:08 a.m.