Files in MultIS

Reconstruction of Clones from Integration Site Readouts and Visualization

R/bw.R R/find_best_nr_cluster.R R/filter_functions.R R/plot_functions.R R/normalize_timecourse.R R/similarity.R R/reconstruct.R R/evaluate_clustering.R inst/doc/QuickStart.R inst/doc/QuickStart.Rmd tests/testthat.R tests/testthat/test-evaluate.R tests/testthat/test-filtering.R tests/testthat/test-similarity.R tests/testthat/test-reconstruct.R vignettes/QuickStart.Rmd man/plot.clusterObj.Rd man/evaluate_clustering_dunn.Rd man/filter_match.Rd man/ggplot_colors.Rd man/filter_nr_tp_min.Rd man/filter_is_names.Rd man/filter_at_tp_min.Rd man/filter_at_tp_biggest_n.Rd man/evaluate_clustering_sdindex.Rd man/plot.ISSimilarity.Rd man/filter_zero_columns.Rd man/bw.Rd man/evaluate_clustering_silhouette.Rd man/filter_zero_rows.Rd man/plot.timeseries.Rd man/lineplot_split_clone.Rd man/convert_columnwise_relative.Rd man/find_best_nr_cluster.Rd man/filter_combine_measurements.Rd man/plot_rsquare.Rd man/reconstruct.Rd man/reconstruct_recursive.Rd man/evaluate_clustering_ptbiserial.Rd man/filter_names.Rd man/normalize_timecourse.Rd man/evaluate_clustering.Rd man/bushmanplot.Rd man/weighted_spring_model.Rd man/reconstruct_kmedoid.Rd man/filter_measurement_names.Rd man/get_similarity_matrix.Rd man/evaluate_clustering_custom.Rd man/evaluate_clustering_bw.Rd