find_best_nr_cluster: Finds the best number of clusters according to silhouette

In MultIS: Reconstruction of Clones from Integration Site Readouts and Visualization

Description

Finds the best number of clusters according to silhouette

Usage

find_best_nr_cluster(
  data,
  sim,
  method_reconstruction = "kmedoids",
  method_evaluation = "silhouette",
  report = FALSE,
  parallel = FALSE,
  best = max,
  return_all = FALSE,
  ...
)

Arguments

data	The barcode data in a matrix.
sim	A similarity matrix.
method_reconstruction	The clustering method to use.
method_evaluation	The evaluation method to use.
report	Whether the current progress should be reported. Note that this will not work if parallel is set to TRUE.
parallel	Whether the clustering should be performed in parallel.
best	The method to use to determine the best clustering.
return_all	Whether to return the silhouette score for all clusterings.
...	passed params to evaluating clustering

Value

The R^2 value for rows is1 and is2 in matrix dat

MultIS documentation built on Aug. 6, 2021, 5:07 p.m.