evaluate_clustering: Evaluate a clustering using the given method

In MultIS: Reconstruction of Clones from Integration Site Readouts and Visualization

Description

Evaluate a clustering using the given method

Usage

evaluate_clustering(readouts, clustering, sim, method, custom_eval = NULL, ...)

Arguments

readouts	The readouts the clustering and similarity matrix are based on.
clustering	The clustering to evaluate.
sim	The similarity matrix, this clustering is based on.
method	The method to evaluate the given clustering. This might be one of "silhouette", "sdindex", "ptbiserial", "dunn", "bw", or "custom'.
custom_eval	A custom function to be run for evaluating a clustering. Only used with method "custom".
...	Further arguments that are passed to a custom function.

Value

A score that describes how well the clustering fits the data.

MultIS documentation built on Aug. 6, 2021, 5:07 p.m.