Files in NAIR

Network Analysis of Immune Repertoire

NEWS.md README.md R/RcppExports.R R/visualization.R R/public_clusters.R R/argchecks_mid.R R/argchecks_lower.R R/main_function.R R/network_analysis.R R/associated_clusters.R R/sim_toy_data.R R/zzz.R R/arghecks_upper.R R/aaa.R R/utils.R inst/doc/cluster_analysis.Rmd inst/doc/dual_chain.Rmd inst/doc/dual_chain.R inst/doc/NAIR.Rmd inst/doc/NAIR.R inst/doc/cluster_analysis.R inst/doc/node_properties.Rmd inst/doc/supplementary.Rmd inst/doc/buildRepSeqNetwork.R inst/doc/buildRepSeqNetwork.Rmd inst/doc/supplementary.R inst/doc/node_properties.R tests/testthat.R tests/testthat/test_argchecks.R tests/testthat/test_functions.R vignettes/cluster_analysis.Rmd vignettes/dual_chain.Rmd vignettes/NAIR.Rmd vignettes/node_properties.Rmd vignettes/supplementary.Rmd vignettes/buildRepSeqNetwork.Rmd man/buildRepSeqNetwork.Rd man/generateNetworkGraph.Rd man/generateNetworkObjects.Rd man/simulateToyData.Rd man/generateAdjacencyMatrix.Rd man/hamDistBounded.Rd man/levDistBounded.Rd man/extractLayout.Rd man/addGraphLabels.Rd man/buildPublicClusterNetwork.Rd man/saveNetworkPlots.Rd man/filterInputData.Rd man/addNodeStats.Rd man/findAssociatedSeqs.Rd man/buildPublicClusterNetworkByRepresentative.Rd man/addPlots.Rd man/aggregateIdenticalClones.Rd man/getClusterStats.Rd man/addClusterLabels.Rd man/addClusterMembership.Rd man/NAIR-package.Rd man/buildAssociatedClusterNetwork.Rd man/findPublicClusters.Rd man/getNeighborhood.Rd man/saveNetwork.Rd man/chooseNodeStats.Rd man/findAssociatedClones.Rd man/addNodeNetworkStats.Rd man/plotNetworkGraph.Rd man/combineSamples.Rd man/addClusterStats.Rd