R/unit.testing.NanoStringNorm.R

In NanoStringNorm: Normalize NanoString miRNA and mRNA Data

# The NanoStringNorm package is copyright (c) 2011 Ontario Institute for Cancer Research (OICR)
# This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL
# (either version 1, or at your option, any later version) or the Artistic License 2.0.  Refer to LICENSE for the full license text.
# OICR makes no representations whatsoever as to the SOFTWARE contained herein.  It is experimental in nature and is provided WITHOUT
# WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. OICR MAKES NO REPRESENTATION
# OR WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR OTHER PROPRIETARY RIGHT.
# By downloading this SOFTWARE, your Institution hereby indemnifies OICR against any loss, claim, damage or liability, of whatsoever kind or
# nature, which may arise from your Institution's respective use, handling or storage of the SOFTWARE.
# If publications result from research using this SOFTWARE, we ask that the Ontario Institute for Cancer Research be acknowledged and/or
# credit be given to OICR scientists, as scientifically appropriate.

.test <- function(dir, pattern = "^test_.*\\.R$") {

    requireNamespace("RUnit");
    package.name <- "NanoStringNorm";

	print(
		paste(
			".test: ",
			system.file("unitTests", package = package.name),
			sep = ""
			)
		);

    suite <- RUnit::defineTestSuite(
        name = paste(package.name, "RUnit Tests", sep = " "),
        dirs = system.file("unitTests", package = package.name),
        testFileRegexp = pattern,
        rngKind = "default",
        rngNormalKind = "default"
        );
    
    result <- RUnit::runTestSuite(suite);
    
    RUnit::printTextProtocol(result, showDetails=TRUE);

    return(result);
    }