Files in NanoStringNorm
Normalize NanoString miRNA and mRNA Data
MD5
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/NanoString.rda
R/background.normalization.R
R/read.markup.RCC.R
R/predict.concentration.R
R/output.formatting.R
R/get.beta.se.and.p.R
R/other.normalization.zscore.R
R/get.sample.summary.stats.R
R/nsn.R
R/get.ttest.and.foldchange.R
R/sample.content.normalization.R
R/other.normalization.rank.normal.R
R/code.count.normalization.R
R/get.geo.mean.R
R/other.normalization.quantile.R
R/Plot.NanoStringNorm.gvis.R
R/Plot.NanoStringNorm.R
R/get.mean.sd.and.cv.R
R/probe.correction.factor.normalization.R
R/check.trait.values.R
R/get.gene.summary.stats.R
R/unit.testing.NanoStringNorm.R
R/other.normalization.R
R/norm.comp.R
R/get.trait.summary.stats.R
R/read.xls.RCC.R
R/NanoStringNorm.R
R/other.normalization.vsn.R
R/get.batch.effects.R
vignettes/Rat_Strain_Normalization_Method_Comparison.png
vignettes/plot_NSN_gvis_sampleStats_screenshot.png
vignettes/plot_NSN_gvis_geneStats_screenshot.png
vignettes/NanoStringNorm_Introduction.Rnw
man/Plot.NanoStringNorm.Rd
man/NanoStringNorm.Rd
man/NanoStringNorm-package.Rd
man/Plot.NanoStringNorm.gvis.Rd
man/other.normalization.Rd
man/read.xls.RCC.Rd
man/read.markup.RCC.Rd
man/NanoString.Rd
man/NanoString.mRNA.Rd
man/norm.comp.Rd
man/nsn.Rd
tests/NanoStringNorm.unitTests.R
inst/doc/NanoStringNorm_Introduction.R
inst/doc/NanoStringNorm_Introduction.Rnw
inst/doc/NanoStringNorm_Introduction.pdf
inst/extdata/input/2011-11-01_NanoString_mRNA_TCDD_anno.txt
inst/extdata/input/mRNA_TCDD.txt
inst/extdata/input/date_data.txt
inst/extdata/input/mRNA_TCDD_anno.txt
inst/extdata/input/mRNA_TCDD_strain_info.txt
inst/extdata/input/mRNA_TCDD_matrix.txt
inst/extdata/output/mRNA_TCDD_housekeeping.geomean_SampleContent_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_Predict_Conc.txt.gz
inst/extdata/output/mRNA_TCDD_top.geo.mean_SampleContent_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_mean_Background_Normalization.txt.gz
inst/extdata/output/date_data.txt
inst/extdata/output/mRNA_TCDD_geo.mean_Code_Count_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_quantile_Other_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_Gene_Summary.txt.gz
inst/extdata/output/mRNA_TCDD_Output_Formatting_roundT_logT.txt.gz
inst/extdata/output/mRNA_TCDD_Sample_Summary.txt.gz
inst/extdata/output/mRNA_TCDD_zscore_Other_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_total.sum_SampleContent_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_top.mean_SampleContent_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_Check_Traits.txt.gz
inst/extdata/output/mRNA_TCDD_NSN_none_matrix.txt.gz
inst/extdata/output/mRNA_TCDD_sum_Code_Count_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_mean.2sd_Background_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_max_Background_Normalization.txt.gz
inst/extdata/output/mRNA_TCDD_Batch_effects.txt.gz
inst/extdata/output/mRNA_TCDD_NSN_none.txt.gz
inst/extdata/output/mRNA_TCDD_NSN_random.txt.gz
inst/extdata/output/mRNA_TCDD_housekeeping.sum_SampleContent_Normalization.txt.gz
inst/extdata/RCC_files/RCCCollector1_rat_tcdd.xls
inst/scripts/create_test_input_output_files.R
inst/unitTests/test_background.normalization.R
inst/unitTests/test_check.trait.values.R
inst/unitTests/test_other.normalization.R
inst/unitTests/test_code.count.normalization.R
inst/unitTests/test_sample.summary.R
inst/unitTests/test_batch.effects.R
inst/unitTests/test_output.formatting.R
inst/unitTests/test_NanoStringNorm.R
inst/unitTests/test_predict.concentration.R
inst/unitTests/debug_test_probe.correction.factor.R
inst/unitTests/test_sample.content.normalization.R
