Nothing
# The NanoStringNorm package is copyright (c) 2012 Ontario Institute for Cancer Research (OICR)
# This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL
# (either version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text.
# OICR makes no representations whatsoever as to the SOFTWARE contained herein. It is experimental in nature and is provided WITHOUT
# WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. OICR MAKES NO REPRESENTATION
# OR WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR OTHER PROPRIETARY RIGHT.
# By downloading this SOFTWARE, your Institution hereby indemnifies OICR against any loss, claim, damage or liability, of whatsoever kind or
# nature, which may arise from your Institution's respective use, handling or storage of the SOFTWARE.
# If publications result from research using this SOFTWARE, we ask that the Ontario Institute for Cancer Research be acknowledged and/or
# credit be given to OICR scientists, as scientifically appropriate.
get.gene.summary.stats <- function(x, anno = NA) {
gene.summary.stats <- apply(
X = x,
MARGIN = 1,
FUN = get.mean.sd.and.cv
);
gene.summary.stats <- t(gene.summary.stats);
# calculate count of missing values (DW missing could be moved to own function)
genes.proportion.missing <- apply(
X = x,
MARGIN = 1,
FUN = function(y) { sum(y <= 0, na.rm = TRUE) / length(y) }
);
gene.summary.stats <- cbind(gene.summary.stats, 100 * genes.proportion.missing);
gene.summary.stats <- round(gene.summary.stats, 1);
colnames(gene.summary.stats) <- c("Mean", "SD", "CV", "Missing");
rownames(gene.summary.stats) <- anno$Name;
return(gene.summary.stats);
}
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.