NetRep: Permutation Testing Network Module Preservation Across Datasets

Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing.

AuthorScott Ritchie [aut, cre]
Date of publication2016-11-16 08:16:22
MaintainerScott Ritchie <sritchie73@gmail.com>
LicenseGPL-2
Version1.0.4

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Files in this package

NetRep
NetRep/inst
NetRep/inst/CITATION
NetRep/inst/doc
NetRep/inst/doc/NetRep.html
NetRep/inst/doc/NetRep.R
NetRep/inst/doc/NetRep.Rmd
NetRep/tests
NetRep/tests/testthat.R
NetRep/tests/testthat
NetRep/tests/testthat/test1-main.R
NetRep/tests/testthat/test2-downstream-analysis.R
NetRep/src
NetRep/src/netStats.cpp
NetRep/src/Makevars
NetRep/src/netStats.h
NetRep/src/interrupt.h
NetRep/src/interrupt.cpp
NetRep/src/properties.cpp
NetRep/src/checkFinite.cpp
NetRep/src/discProps.cpp
NetRep/src/permutationsNoData.cpp
NetRep/src/thread-utils.h
NetRep/src/utils.h
NetRep/src/utils.cpp
NetRep/src/permutations.cpp
NetRep/src/scale.cpp
NetRep/src/thread-utils.cpp
NetRep/src/scale.h
NetRep/src/NetRep_types.h
NetRep/src/Makevars.win
NetRep/src/RcppExports.cpp
NetRep/NAMESPACE
NetRep/data
NetRep/data/NetRep.rda
NetRep/R
NetRep/R/multi-machine.R NetRep/R/utils.R NetRep/R/check-user-input.R NetRep/R/disk-matrix-class.R NetRep/R/bigMatrix.R NetRep/R/orderNodes.R NetRep/R/modulePreservation.R NetRep/R/plot-topology.R NetRep/R/contingency.R NetRep/R/plot-utils.R NetRep/R/orderSamples.R NetRep/R/plot-module.R NetRep/R/example-data.R NetRep/R/networkProperties.R NetRep/R/pperm.R NetRep/R/RcppExports.R NetRep/R/NetRep.R NetRep/R/plot-functions.R NetRep/R/roxygen-defs.R
NetRep/vignettes
NetRep/vignettes/NetRep_files
NetRep/vignettes/NetRep_files/img
NetRep/vignettes/NetRep_files/img/preservation.png
NetRep/vignettes/NetRep_files/img/mod1.png
NetRep/vignettes/NetRep_files/figure-html
NetRep/vignettes/NetRep_files/figure-html/dry_run_customised-1.png
NetRep/vignettes/NetRep_files/figure-html/mean_degree_customised-1.png
NetRep/vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.png
NetRep/vignettes/NetRep_files/figure-html/modules_in_discovery-1.png
NetRep/vignettes/NetRep_files/figure-html/mean_degree-1.png
NetRep/vignettes/NetRep_files/figure-html/disk_matrix_plot-1.png
NetRep/vignettes/NetRep_files/figure-html/correlation_heatmap-1.png
NetRep/vignettes/NetRep_files/figure-html/modules_in_test-1.png
NetRep/vignettes/NetRep_files/figure-html/dry_run-1.png
NetRep/vignettes/NetRep.Rmd
NetRep/README.md
NetRep/MD5
NetRep/build
NetRep/build/vignette.rds
NetRep/DESCRIPTION
NetRep/ChangeLog
NetRep/man
NetRep/man/orderModules_param.Rd NetRep/man/NetRep.Rd NetRep/man/example-data.Rd NetRep/man/simplify_param.Rd NetRep/man/permutationTest.Rd NetRep/man/nodeOrder.Rd NetRep/man/requiredPerms.Rd NetRep/man/sampleOrder.Rd NetRep/man/plot_params.Rd NetRep/man/combineAnalyses.Rd NetRep/man/common_params.Rd NetRep/man/modulePreservation.Rd NetRep/man/disk.matrix.Rd NetRep/man/plotModule.Rd NetRep/man/networkProperties.Rd NetRep/man/bigMatrix.Rd NetRep/man/plotTopology.Rd

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