estimateSizeFactorsForMatrix: estimateSizeFactorsForMatrix

In NormExpression: Normalize Gene Expression Data using Evaluated Methods

estimateSizeFactorsForMatrix

Description

Please refer to the file /inst/doc/readme.pdf.

Usage

estimateSizeFactorsForMatrix(data, p = p)

Arguments

data	Please refer to the file /inst/doc/readme.pdf.
p	Please refer to the file /inst/doc/readme.pdf.

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (data, p = p)
{
    loggeomeans <- rowMeans(.log(data), na.rm = TRUE)
    apply(data, 2, function(cnts) exp(quantile(.log(cnts) - loggeomeans,
        na.rm = TRUE, p = p)))
  }

NormExpression documentation built on May 29, 2024, 2 a.m.