identifyUbqRepeat | R Documentation |
Please refer to the file /inst/doc/readme.pdf.
identifyUbqRepeat(data, pre_ratioC = NULL, lower_trimC = NULL, upper_trimC = NULL)
data |
Please refer to the file /inst/doc/readme.pdf. |
pre_ratioC |
Please refer to the file /inst/doc/readme.pdf. |
lower_trimC |
Please refer to the file /inst/doc/readme.pdf. |
upper_trimC |
Please refer to the file /inst/doc/readme.pdf. |
##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (data, pre_ratioC = NULL, lower_trimC = NULL, upper_trimC = NULL)
{
qlower <- apply(data, 2, function(x) quantile(x[x != 0],
p = lower_trimC))
qupper <- apply(data, 2, function(x) quantile(x[x != 0],
p = upper_trimC))
ubq_genes <- NULL
for (i in 1:nrow(data)) {
genes_finded <- findGenes(data[i, ], qlower = qlower,
qupper = qupper, pre_ratio = pre_ratioC)
ubq_genes <- c(ubq_genes, genes_finded)
}
return(ubq_genes)
}
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