ORIClust: Order-restricted Information Criterion-based Clustering Algorithm

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ORIClust is a user-friendly R-based software package for gene clustering. Clusters are given by genes matched to prespecified profiles across various ordered treatment groups. It is particularly useful for analyzing data obtained from short time-course or dose-response microarray experiments.

Author
Tianqing Liu, Nan Lin, Ningzhong Shi and Baoxue Zhang
Date of publication
2012-10-29 08:57:22
Maintainer
Tianqing Liu <tianqingliu@gmail.com>
License
GPL-2
Version
1.0-1

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Man pages

Breast
Breast cancer cell line data
complete.profile
complete.profile
cyclical.max.min
cyclical.max.min
cyclical.min.max
cyclical.min.max
decreasing
decreasing
down.up
down.up
flat.pattern
flat.pattern
increasing
increasing
isodecre
isodecre
isoincre
isoincre
ORICC1-package
One-stage ORICC
ORICC2-package
Two-stage ORICC
ORIClust-package
Order-restricted Information Criterion-based Clustering...
up.down
up.down

Files in this package

ORIClust
ORIClust/data
ORIClust/data/Breast.rda
ORIClust/NAMESPACE
ORIClust/man
ORIClust/man/decreasing.Rd
ORIClust/man/flat.pattern.Rd
ORIClust/man/Breast.Rd
ORIClust/man/isodecre.Rd
ORIClust/man/up.down.Rd
ORIClust/man/isoincre.Rd
ORIClust/man/cyclical.min.max.Rd
ORIClust/man/ORIClust-package.Rd
ORIClust/man/cyclical.max.min.Rd
ORIClust/man/ORICC2-package.Rd
ORIClust/man/complete.profile.Rd
ORIClust/man/increasing.Rd
ORIClust/man/ORICC1-package.Rd
ORIClust/man/down.up.Rd
ORIClust/DESCRIPTION
ORIClust/MD5
ORIClust/R
ORIClust/R/complete.profile.R
ORIClust/R/cyclical.min.max.R
ORIClust/R/cyclical.max.min.R
ORIClust/R/ORICC1.R
ORIClust/R/down.up.R
ORIClust/R/increasing.R
ORIClust/R/ORICC2.R
ORIClust/R/isoincre.R
ORIClust/R/decreasing.R
ORIClust/R/up.down.R
ORIClust/R/flat.pattern.R
ORIClust/R/isodecre.R