ORdensity: Identification of Differentially Expressed Genes

Automated discovery of differentially expressed genes. The method (called ORdensity) is composed of two phases: discovering potential differentially expressed genes and recognizing differentially expressed genes. It makes use of a permutation resampling procedure to build outlying and density indexes. References: a) Irigoien, I. and Arenas, C. (2018). "Identification of differentially expressed genes by means of outlier detection". <doi:10.1186/s12859-018-2318-8>. b) Martínez-Otzeta, J. M., Irigoien, I., Sierra, B., and Arenas, C. (2020). "ORdensity: user-friendly R package to identify differentially expressed genes". <doi:10.1186/s12859-020-3463-4>.

Package details

AuthorJosé María Martínez Otzeta, Concepción Arenas, Basilio Sierra, Itziar Irigoien
MaintainerJosé María Martínez Otzeta <josemaria.martinezo@ehu.eus>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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ORdensity documentation built on July 1, 2020, 7:10 p.m.