Description Usage Arguments Value Examples
This function returns the description of all the identified potential DE genes in terms of variables OR, FP, and dFP in one only table so that the interesed user can perform her own clustering analysis.
1 2 3 4 | preclusteredData(object, verbose = TRUE)
## S4 method for signature 'ORdensity'
preclusteredData(object, verbose = TRUE)
|
object |
Object of class |
verbose |
Boolean indicating if log messages are going to be printed. |
data.frame
with all potential DE genes.
1 2 3 4 5 6 7 8 9 | # Read data from 2 experimental conditions
simexpr_reduced <- simexpr[c(1:15,101:235),]
x <- simexpr_reduced[, 3:32]
y <- simexpr_reduced[, 33:62]
EXC.1 <- as.matrix(x)
EXC.2 <- as.matrix(y)
myORdensity <- new("ORdensity", Exp_cond_1 = EXC.1, Exp_cond_2 = EXC.2, B = 20)
# dataframe with all potential DE genes:
preclusteredData(myORdensity)
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