characterizationCompareContinuous: A function to extract cohort aggregate continuous feature...

In OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator

A function to extract cohort aggregate continuous feature characterization results

Description

A function to extract cohort aggregate continuous feature characterization results

Usage

characterizationCompareContinuous(
  connectionHandler,
  schema,
  cTablePrefix = "c_",
  cgTablePrefix = "cg_",
  databaseTable = "database_meta_data",
  characterizationTargetIds = NULL,
  databaseIds = NULL,
  minThreshold = 0
)

Arguments

connectionHandler	A connection handler that connects to the database and extracts sql queries. Create a connection handler via 'ResultModelManager::ConnectionHandler$new()'.
schema	The result database schema (e.g., 'main' for sqlite)
cTablePrefix	The prefix used for the characterization results tables
cgTablePrefix	The prefix used for the cohort generator results tables
databaseTable	The name of the table with the database details (default 'database_meta_data')
characterizationTargetIds	(optional) The characterization target ids
databaseIds	(optional) One or more unique identifiers for the databases
minThreshold	The minimum fraction of the cohort that must have the feature for it to be reported

Details

Specify the connectionHandler, the schema and the target cohort ID and database id

Value

A data.frame with the characterization aggregate continuous features for a specific cohort and database

See Also

Other Characterization: characterizationCompareBinary(), getAggregateBinaryRiskFactors(), getAggregateContinuousRiskFactors(), getBinaryCaseSeries(), getBinaryRiskFactors(), getBinaryTargetBaseline(), getCaseCounts(), getCharacterizationCaseSettings(), getCharacterizationDemographics(), getCharacterizationTargetSettings(), getContinuousCaseSeries(), getContinuousRiskFactors(), getContinuousTargetBaseline(), getDechallengeRechallenge(), getDechallengeRechallengeFails(), getIncidenceRates(), getIncidenceTargetSettings(), getNonCaseCounts(), getOutcomesUsedInCharacterization(), getOutcomesUsedInIncidence(), getTargetCounts(), getTargetsUsedInCharacterization(), getTargetsUsedInIncidence(), getTimeToEvent(), plotAgeDistributions(), plotSexDistributions(), viewIncidenceRate()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

binCohort <- characterizationCompareContinuous(
  connectionHandler = connectionHandler, 
  schema = 'main',
  characterizationTargetIds = 1, 
  databaseIds = 'eunomia'
)

OhdsiReportGenerator documentation built on Nov. 14, 2026, 1:09 a.m.