getContinuousRiskFactors: A function to extract non-case and case continuous...

In OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator

A function to extract non-case and case continuous characterization results

Description

A function to extract non-case and case continuous characterization results

Usage

getContinuousRiskFactors(
  connectionHandler,
  schema,
  cTablePrefix = "c_",
  cgTablePrefix = "cg_",
  databaseTable = "database_meta_data",
  targetId = NULL,
  outcomeId = NULL,
  analysisIds = NULL
)

Arguments

connectionHandler	A connection handler that connects to the database and extracts sql queries. Create a connection handler via 'ResultModelManager::ConnectionHandler$new()'.
schema	The result database schema (e.g., 'main' for sqlite)
cTablePrefix	The prefix used for the characterization results tables
cgTablePrefix	The prefix used for the cohort generator results tables
databaseTable	The name of the table with the database details (default 'database_meta_data')
targetId	An integer corresponding to the target cohort ID
outcomeId	Am integer corresponding to the outcome cohort ID
analysisIds	The feature extraction analysis ID of interest (e.g., 201 is condition)

Details

Specify the connectionHandler, the schema and the target/outcome cohort IDs

Value

A data.frame with the characterization results for the cases and non-cases

See Also

Other Characterization: getBinaryCaseSeries(), getBinaryRiskFactors(), getCaseBinaryFeatures(), getCaseContinuousFeatures(), getCaseCounts(), getCharacterizationDemographics(), getContinuousCaseSeries(), getDechallengeRechallenge(), getIncidenceRates(), getTargetBinaryFeatures(), getTargetContinuousFeatures(), getTargetCounts(), getTimeToEvent(), plotAgeDistributions(), plotSexDistributions()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

rf <- getContinuousRiskFactors(
  connectionHandler = connectionHandler, 
  schema = 'main',
  targetId = 1, 
  outcomeId = 3
)

OhdsiReportGenerator documentation built on April 12, 2025, 2:09 a.m.